BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0584500 Os04g0584500|AK099968
         (290 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0584500  Armadillo-like helical domain containing protein    516   e-146

>Os04g0584500 Armadillo-like helical domain containing protein
          Length = 290

 Score =  516 bits (1328), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/290 (88%), Positives = 258/290 (88%)

Query: 1   MHPNMSCMYMRFHLTKYFNCHRREIVELFLRGXXXXXXXXXXXXXXXXXRRSPNEEQALG 60
           MHPNMSCMYMRFHLTKYFNCHRREIVELFLRG                 RRSPNEEQALG
Sbjct: 1   MHPNMSCMYMRFHLTKYFNCHRREIVELFLRGLRTELTMETMNLLLEHLRRSPNEEQALG 60

Query: 61  AVLLLHFDHALVEPHRDSVYREEAAKIITHSLRCSLSEENVVANIRKAXXXXXXXXXXXX 120
           AVLLLHFDHALVEPHRDSVYREEAAKIITHSLRCSLSEENVVANIRKA            
Sbjct: 61  AVLLLHFDHALVEPHRDSVYREEAAKIITHSLRCSLSEENVVANIRKALLLLGGHFSFSG 120

Query: 121 XXXAEDRMLKQAGFVDGSRVTRADSDAAVQDKGRDEDEVWLRDVTAALLGSGRRPFLEAL 180
              AEDRMLKQAGFVDGSRVTRADSDAAVQDKGRDEDEVWLRDVTAALLGSGRRPFLEAL
Sbjct: 121 DLLAEDRMLKQAGFVDGSRVTRADSDAAVQDKGRDEDEVWLRDVTAALLGSGRRPFLEAL 180

Query: 181 SMCMSSPNHDLAAVCLTTAAWLSRSLASIDAADVQLAAFSALIPRLKQRLAGDRSQAQHR 240
           SMCMSSPNHDLAAVCLTTAAWLSRSLASIDAADVQLAAFSALIPRLKQRLAGDRSQAQHR
Sbjct: 181 SMCMSSPNHDLAAVCLTTAAWLSRSLASIDAADVQLAAFSALIPRLKQRLAGDRSQAQHR 240

Query: 241 VLASVTLYNFSKIPDCRALLMLLADGLRDHLVELAELTWTAGQLITELQE 290
           VLASVTLYNFSKIPDCRALLMLLADGLRDHLVELAELTWTAGQLITELQE
Sbjct: 241 VLASVTLYNFSKIPDCRALLMLLADGLRDHLVELAELTWTAGQLITELQE 290



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,033,928
Number of extensions: 270201
Number of successful extensions: 660
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)