Os04g0572600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0572600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.48 | 0.344 | 10.3 | -1.07 | 0.817 | 0.646 | 0.288 | -0.884 | -0.338 | 7.43 | 10.01 | 1427 | -- | -- |
| 55.3 | 0.346 | 10.3 | -1.07 | 0.821 | 0.651 | 0.324 | -- | -0.34 | 7.46 | 10.01 | 1428 | -- | -- |
| 53.69 | 0.341 | 10.3 | -1.06 | 0.818 | 0.644 | -- | -0.896 | -0.337 | 7.47 | 10.01 | 1422 | -- | -- |
| 55.11 | 0.346 | 10.2 | -0.943 | 0.85 | 0.632 | -- | -- | -0.323 | 7.51 | 10.08 | 1409 | -- | -- |
| 88.69 | 0.439 | 10.3 | -1.08 | -- | 0.669 | -- | -0.975 | -0.344 | -- | 10 | 1473 | -- | -- |
| 65.84 | 0.38 | 10.2 | -0.73 | 0.814 | -- | 0.304 | -- | -0.0974 | 7.28 | -- | -- | -- | -- |
| 66.08 | 0.381 | 10.2 | -0.723 | 0.814 | -- | -- | -- | -0.0979 | 7.32 | -- | -- | -- | -- |
| 90.09 | 0.442 | 10.3 | -0.938 | -- | 0.701 | -- | -- | -0.342 | -- | 10.01 | 1476 | -- | -- |
| 71.88 | 0.395 | 10.2 | -- | 0.883 | 0.64 | -- | -- | -0.122 | 7.73 | 7.273 | 2840 | -- | -- |
| 101.29 | 0.47 | 10.2 | -0.709 | -- | -- | -- | -- | -0.0842 | -- | -- | -- | -- | -- |
| 79.86 | 0.418 | 10.2 | -- | 0.807 | -- | -- | -- | -0.0173 | 7.38 | -- | -- | -- | -- |
| 103.65 | 0.474 | 10.2 | -- | -- | 0.745 | -- | -- | -0.278 | -- | 4.137 | 1485 | -- | -- |
| 114.56 | 0.5 | 10.2 | -- | -- | -- | -- | -- | -0.00555 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 19 | 51.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 33 | 52.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 44 | 52.61 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 48 | 52.64 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 49 | 52.68 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 55 | 52.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 60 | 52.77 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 72 | 52.87 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 78 | 52.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 82 | 53.03 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 83 | 53.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 86 | 53.08 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 92 | 53.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 105 | 53.25 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 137 | 53.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 142 | 53.48 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 153 | 53.53 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 168 | 53.54 | radiation | 10 | 1440 | > th | dose independent | sin | 4 | NA |
| 169 | 53.54 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 244 | 53.55 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 266 | 53.62 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 9 |
| 270 | 53.64 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 283 | 53.66 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 304 | 53.69 | humidity | 80 | 1440 | > th | dose independent | sin | 5 | NA |
| 340 | 53.72 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 422 | 53.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 483 | 53.90 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 519 | 53.93 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 529 | 53.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 563 | 53.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 644 | 54.03 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 665 | 54.05 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 667 | 54.05 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 687 | 54.07 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 4 |
| 696 | 54.07 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 723 | 54.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 748 | 54.12 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 757 | 54.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 762 | 54.13 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 772 | 54.14 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 782 | 54.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 793 | 54.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 805 | 54.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 817 | 54.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 834 | 54.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 935 | 54.23 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 943 | 54.23 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 987 | 54.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 997 | 54.26 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |