BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0572600 Os04g0572600|AK064589
(449 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G63020.1 | chr1:23355329-23361126 REVERSE LENGTH=1454 241 5e-64
AT2G40030.1 | chr2:16715089-16723406 FORWARD LENGTH=1977 84 2e-16
AT1G45230.1 | chr1:17169874-17171381 REVERSE LENGTH=220 57 2e-08
AT3G46630.1 | chr3:17181138-17182346 REVERSE LENGTH=208 52 5e-07
>AT1G63020.1 | chr1:23355329-23361126 REVERSE LENGTH=1454
Length = 1453
Score = 241 bits (616), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 146/452 (32%), Positives = 237/452 (52%), Gaps = 19/452 (4%)
Query: 1 MKIKRLRLEFIVREIIDQYNTLRKQLNNAIPSVSISNSK-CSVGNECVKNQTCCVTM-VV 58
+K K+L E +V + +QY + ++L I + I N+ CS ++ +K+ C+T+ VV
Sbjct: 991 LKRKQLSAESVVSSLNEQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKDDNVCITVTVV 1050
Query: 59 QVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKVQCQE------------DNELVLK 106
+ +S+ +LD I+ +IP +L + +KG K V + + EL LK
Sbjct: 1051 EASKHSVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLK 1110
Query: 107 VGMSEHCKSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESVRST 166
V M W L C+PIM++IDW RS P+ + YGID+ FV ++ S
Sbjct: 1111 VTMYGDRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESA 1170
Query: 167 TDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFI 226
G+ I R+HLL+VAD LSV+G+F L+++G +QR S +PF++ACFS P+ F+
Sbjct: 1171 VSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFL 1230
Query: 227 NAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQA 286
AAK D+L G++DA+AWGK P G+ F+I+ S K H +YD L + +
Sbjct: 1231 KAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMR 1290
Query: 287 LEKNVMDTYXXXXXXXXXXXXALNSEGNATINGGAISFNQKFLNAKVGIWENIIDMRTSL 346
+ + A + ++G I + L + W+NI + SL
Sbjct: 1291 RTNSAPKSDKATVQPFGLLHSAFLKDIKV-LDGKGIPMS---LLRTIFTWKNIELLSQSL 1346
Query: 347 QNMLREYTLNEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLR 406
+ +L Y +NE++ E+D+ + L+ HP +KIG G++ I++ H S CF V+R
Sbjct: 1347 KRILHSYEINELLNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVA-KSKHGDSCCFEVVR 1405
Query: 407 NDDTTADFSYNKCVLGAANSISPELGSYIENR 438
D T DFSY+KCVLGA I+P+ ++ +++
Sbjct: 1406 IDGTFEDFSYHKCVLGATKIIAPKKMNFYKSK 1437
>AT2G40030.1 | chr2:16715089-16723406 FORWARD LENGTH=1977
Length = 1976
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 22/280 (7%)
Query: 23 RKQLNNAIPSVSISNSKC-SVGNECVKNQT--CCVTMVVQVEINSMSQ-LDVIKERVIPS 78
+K+ + S+S S+C S + C + C+T + + LDV+ V P
Sbjct: 972 KKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNATDPDLERTLDVLCNTVYPV 1031
Query: 79 ILATLLKGFLEFKNVKV--------------QCQEDNELVLKVGMSEHC--KSGKFWATL 122
+L ++KG + + E VL V + + +SG W +
Sbjct: 1032 LLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVV 1091
Query: 123 QNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESVRSTTDAIGRNIHRQHLLVV 182
++C+ ++ LID +RS P V G+ A++ V+ + ++ + + + ++H++++
Sbjct: 1092 IDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILL 1151
Query: 183 ADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDNLSGTLD 242
A+ ++ SG G +S G K L+I +PF+EA P F AA++ D+LS +
Sbjct: 1152 ANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVG 1211
Query: 243 AIAWGKEPCAGSSGPFKILYSGKSH--ETKQNEHIYDFLH 280
+ +WGK G+ F++L++ K + K+ +Y FL
Sbjct: 1212 SCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQ 1251
>AT1G45230.1 | chr1:17169874-17171381 REVERSE LENGTH=220
Length = 219
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 356 NEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFS 415
+ + E +++ + L +HP KIG GI I +G +P SSRC ++R D DFS
Sbjct: 128 DRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFS 187
Query: 416 YNKCVLGAANSISPELGS-----YIENRRSNR 442
Y KC+ G P + RR NR
Sbjct: 188 YWKCIKGLIKKKYPLYADSFILRHFRKRRQNR 219
>AT3G46630.1 | chr3:17181138-17182346 REVERSE LENGTH=208
Length = 207
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 353 YTLNEVVTEQDKSCLMEAL-KFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTT 411
Y E + +D+ +ME L +HP DKIG G+ I + +P SRC V+R D
Sbjct: 114 YLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGW 173
Query: 412 ADFSYNKCVLGAANSISP 429
DFSY KC+ P
Sbjct: 174 IDFSYQKCLRAYVRDKYP 191
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,562,512
Number of extensions: 389677
Number of successful extensions: 880
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 4
Length of query: 449
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 347
Effective length of database: 8,310,137
Effective search space: 2883617539
Effective search space used: 2883617539
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)