BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0572600 Os04g0572600|AK064589
(449 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0572600 Conserved hypothetical protein 909 0.0
Os09g0555200 Conserved hypothetical protein 585 e-167
Os01g0965000 97 2e-20
>Os04g0572600 Conserved hypothetical protein
Length = 449
Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/449 (97%), Positives = 437/449 (97%)
Query: 1 MKIKRLRLEFIVREIIDQYNTLRKQLNNAIPSVSISNSKCSVGNECVKNQTCCVTMVVQV 60
MKIKRLRLEFIVREIIDQYNTLRKQLNNAIPSVSISNSKCSVGNECVKNQTCCVTMVVQV
Sbjct: 1 MKIKRLRLEFIVREIIDQYNTLRKQLNNAIPSVSISNSKCSVGNECVKNQTCCVTMVVQV 60
Query: 61 EINSMSQLDVIKERVIPSILATLLKGFLEFKNVKVQCQEDNELVLKVGMSEHCKSGKFWA 120
EINSMSQLDVIKERVIPSILATLLKGFLEFKNVKVQCQEDNELVLKVGMSEHCKSGKFWA
Sbjct: 61 EINSMSQLDVIKERVIPSILATLLKGFLEFKNVKVQCQEDNELVLKVGMSEHCKSGKFWA 120
Query: 121 TLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESVRSTTDAIGRNIHRQHLL 180
TLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESVRSTTDAIGRNIHRQHLL
Sbjct: 121 TLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESVRSTTDAIGRNIHRQHLL 180
Query: 181 VVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDNLSGT 240
VVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDNLSGT
Sbjct: 181 VVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDNLSGT 240
Query: 241 LDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVMDTYXXXXX 300
LDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVMDTY
Sbjct: 241 LDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVMDTYRKRTE 300
Query: 301 XXXXXXXALNSEGNATINGGAISFNQKFLNAKVGIWENIIDMRTSLQNMLREYTLNEVVT 360
ALNSEGNATINGGAISFNQKFLNAKVGIWENIIDMRTSLQNMLREYTLNEVVT
Sbjct: 301 KTSKRRSALNSEGNATINGGAISFNQKFLNAKVGIWENIIDMRTSLQNMLREYTLNEVVT 360
Query: 361 EQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCV 420
EQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCV
Sbjct: 361 EQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCV 420
Query: 421 LGAANSISPELGSYIENRRSNRAVRPHQL 449
LGAANSISPELGSYIENRRSNRAVRPHQL
Sbjct: 421 LGAANSISPELGSYIENRRSNRAVRPHQL 449
>Os09g0555200 Conserved hypothetical protein
Length = 318
Score = 585 bits (1508), Expect = e-167, Method: Compositional matrix adjust.
Identities = 275/318 (86%), Positives = 293/318 (92%)
Query: 132 LIDWERSRPERVYDNFCSYGIDSAWKFFVESVRSTTDAIGRNIHRQHLLVVADCLSVSGQ 191
LIDWERSRPERVYD FCSYGIDSAWK+FVES+RSTTDAIGRNIHRQHLLVVADCLS+SGQ
Sbjct: 1 LIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQ 60
Query: 192 FHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPC 251
FHGLSSQGLKQQR WLSISSPFSEACFSRPA+SFINAAKRDSVDNLSG LDAIAWGKEPC
Sbjct: 61 FHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPC 120
Query: 252 AGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVMDTYXXXXXXXXXXXXALNS 311
AG+SGPFK+LYSGKS +TKQN++IYDFLHNPEVQALEKN MDTY A +S
Sbjct: 121 AGTSGPFKVLYSGKSQKTKQNKNIYDFLHNPEVQALEKNFMDTYKQRTEKPSKQRSAFSS 180
Query: 312 EGNATINGGAISFNQKFLNAKVGIWENIIDMRTSLQNMLREYTLNEVVTEQDKSCLMEAL 371
+GNATINGG IS NQKFL++KVGIWENIIDMRT LQNMLREYTLNEVVTEQDKSCL+EAL
Sbjct: 181 KGNATINGGTISVNQKFLDSKVGIWENIIDMRTCLQNMLREYTLNEVVTEQDKSCLIEAL 240
Query: 372 KFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPEL 431
KFHPRGYDKIGVGIREIKIGVNPGHP+SRCFIV R+DDT+ADFSYNKCVLGAANSISPEL
Sbjct: 241 KFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPEL 300
Query: 432 GSYIENRRSNRAVRPHQL 449
GSYIE SNRA+RPHQL
Sbjct: 301 GSYIEKILSNRAIRPHQL 318
>Os01g0965000
Length = 1570
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 33/256 (12%)
Query: 68 LDVIKERVIPSILATLLKG---FLEFKNVKVQ-----------CQEDNELVLKVGMSEHC 113
+D + + P IL T++KG E V+++ ++ E L++ + E
Sbjct: 991 IDFMTNAIFPIILDTVIKGDPRVEEANLVRIEPESTFWVQSSGAEQKGEAALEITVEEAA 1050
Query: 114 --KSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWK----------FFVE 161
+SG W NACIP+M+LID RS P + +GI SA++ +
Sbjct: 1051 AAESGNAWGVAMNACIPVMDLIDTTRSMPYDIQQVRQVFGISSAFEKVTQVQLFPFLLLA 1110
Query: 162 SVRSTTDAIG---RNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACF 218
++ + ++G +++ ++HL VA ++ +G HG ++ G K L + +PF EA
Sbjct: 1111 EIQYLSKSVGMITKSVLQEHLTTVASSMTCTGDLHGFNNSGYKATCQSLKVQAPFMEATL 1170
Query: 219 SRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQN----EH 274
SR F AA + D L + A +WG G+ F+IL++ ++ + ++
Sbjct: 1171 SRSIQCFEKAAAKAYSDQLGNVVSACSWGNNAEIGTGSAFEILWNDENMSSSKSILGGYG 1230
Query: 275 IYDFLHNPEVQALEKN 290
+YDFL E K+
Sbjct: 1231 LYDFLEAVETTGATKD 1246
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,215,390
Number of extensions: 550073
Number of successful extensions: 1014
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1013
Number of HSP's successfully gapped: 3
Length of query: 449
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 345
Effective length of database: 11,605,545
Effective search space: 4003913025
Effective search space used: 4003913025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)