Os04g0569900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : IQ calmodulin-binding region domain containing protein.
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Os04g0569900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : IQ calmodulin-binding region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.8 | 0.512 | 11.4 | -0.385 | 1.92 | -1.53 | 0.618 | -1.22 | -0.285 | 8.02 | 7.993 | 49 | -- | -- |
| 123.86 | 0.518 | 11.4 | -0.409 | 1.93 | -1.49 | 1.59 | -- | -0.271 | 8.14 | 7.489 | 53 | -- | -- |
| 119.51 | 0.509 | 11.4 | -0.367 | 1.95 | -1.51 | -- | -1.47 | -0.278 | 8.03 | 7.867 | 53 | -- | -- |
| 132.23 | 0.536 | 11.4 | -0.362 | 1.94 | -1.54 | -- | -- | -0.277 | 7.95 | 7.146 | 60 | -- | -- |
| 231.89 | 0.713 | 11.4 | -0.369 | -- | -2.28 | -- | -1.2 | -0.204 | -- | 7.174 | 35 | -- | -- |
| 161.39 | 0.596 | 11.3 | -0.438 | 3.14 | -- | 1.63 | -- | -0.16 | 10 | -- | -- | -- | -- |
| 171.74 | 0.614 | 11.3 | -0.375 | 3.14 | -- | -- | -- | -0.157 | 9.99 | -- | -- | -- | -- |
| 240.26 | 0.722 | 11.4 | -0.431 | -- | -2.24 | -- | -- | -0.216 | -- | 6.34 | 2 | -- | -- |
| 135.83 | 0.543 | 11.4 | -- | 1.93 | -1.53 | -- | -- | -0.249 | 8.01 | 7.362 | 60 | -- | -- |
| 763.26 | 1.29 | 11.4 | -0.414 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 175.46 | 0.62 | 11.3 | -- | 3.14 | -- | -- | -- | -0.115 | 10 | -- | -- | -- | -- |
| 243.04 | 0.726 | 11.4 | -- | -- | -2.28 | -- | -- | -0.186 | -- | 6.312 | 2 | -- | -- |
| 767.77 | 1.29 | 11.4 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.82 | radiation | 10 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 2 | 121.10 | radiation | 10 | 30 | < th | dose dependent | rect. | 10 | 23 |
| 7 | 121.27 | radiation | 10 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 8 | 121.28 | radiation | 10 | 30 | < th | dose dependent | no | NA | NA |
| 11 | 121.41 | radiation | 10 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 22 | 123.70 | radiation | 10 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 66 | 127.22 | radiation | 10 | 90 | < th | dose dependent | rect. | 22 | 23 |
| 88 | 128.88 | radiation | 10 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 133 | 131.46 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 21 |
| 135 | 131.61 | radiation | 1 | 90 | > th | dose independent | rect. | 17 | 23 |
| 138 | 131.69 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 12 |
| 149 | 132.25 | radiation | 1 | 30 | > th | dose independent | rect. | 6 | 13 |
| 161 | 132.36 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 177 | 132.89 | radiation | 10 | 30 | < th | dose dependent | sin | 1 | NA |
| 195 | 133.05 | radiation | 10 | 90 | < th | dose independent | rect. | 7 | 23 |
| 208 | 133.26 | radiation | 10 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 219 | 133.58 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 22 |
| 230 | 133.92 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 10 |
| 236 | 134.13 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 13 |
| 247 | 134.13 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 252 | 134.23 | radiation | 1 | 90 | < th | dose independent | rect. | 24 | 19 |
| 281 | 134.96 | radiation | 1 | 90 | > th | dose independent | sin | 1 | NA |
| 285 | 135.02 | radiation | 1 | 90 | < th | dose independent | sin | 1 | NA |
| 287 | 135.11 | radiation | 1 | 90 | > th | dose independent | no | NA | NA |
| 344 | 135.17 | radiation | 1 | 90 | < th | dose independent | no | NA | NA |
| 345 | 135.18 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 23 |
| 346 | 135.21 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 14 |
| 347 | 135.23 | radiation | 1 | 90 | < th | dose independent | rect. | 11 | 23 |
| 382 | 135.65 | radiation | 10 | 10 | < th | dose independent | rect. | 12 | 18 |
| 412 | 136.02 | humidity | 60 | 10 | > th | dose dependent | rect. | 10 | 11 |
| 418 | 136.08 | radiation | 1 | 90 | < th | dose independent | rect. | 15 | 23 |
| 426 | 136.24 | humidity | 70 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 432 | 136.34 | radiation | 10 | 10 | < th | dose independent | rect. | 10 | 20 |
| 433 | 136.37 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 435 | 136.42 | humidity | 70 | 10 | > th | dose independent | rect. | 12 | 18 |
| 439 | 136.46 | humidity | 80 | 10 | > th | dose dependent | sin | 23 | NA |
| 452 | 136.61 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 494 | 136.98 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 23 |
| 499 | 137.07 | radiation | 10 | 90 | > th | dose independent | rect. | 11 | 22 |
| 510 | 137.17 | humidity | 70 | 90 | > th | dose dependent | rect. | 11 | 8 |
| 544 | 137.52 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 12 |
| 586 | 137.82 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 592 | 137.91 | humidity | 80 | 10 | > th | dose independent | rect. | 24 | 21 |
| 603 | 137.99 | temperature | 10 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 608 | 138.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 614 | 138.05 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 624 | 138.18 | humidity | 90 | 10 | < th | dose independent | sin | 0 | NA |
| 627 | 138.19 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 642 | 138.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 658 | 138.49 | humidity | 80 | 10 | > th | dose dependent | rect. | 7 | 14 |
| 671 | 138.59 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 708 | 138.84 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 722 | 138.94 | radiation | 10 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 818 | 139.09 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 957 | 139.55 | humidity | 80 | 30 | > th | dose independent | rect. | 7 | 23 |
| 993 | 139.74 | radiation | 1 | 10 | > th | dose independent | rect. | 6 | 10 |