BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0569900 Os04g0569900|AK100392
(464 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23060.1 | chr4:12087283-12090408 FORWARD LENGTH=485 125 6e-29
AT5G07240.1 | chr5:2272028-2274051 FORWARD LENGTH=402 76 3e-14
AT2G26180.1 | chr2:11143433-11144982 REVERSE LENGTH=417 58 1e-08
AT5G62070.1 | chr5:24930057-24932451 REVERSE LENGTH=404 57 1e-08
AT3G22190.1 | chr3:7831280-7833512 REVERSE LENGTH=423 57 2e-08
AT1G01110.2 | chr1:52239-54494 FORWARD LENGTH=528 57 2e-08
AT4G00820.1 | chr4:349300-351307 FORWARD LENGTH=535 56 3e-08
AT3G16490.1 | chr3:5603962-5605489 REVERSE LENGTH=390 56 4e-08
AT4G14750.1 | chr4:8470449-8471903 FORWARD LENGTH=388 56 5e-08
AT4G10640.1 | chr4:6571999-6574312 FORWARD LENGTH=424 56 5e-08
AT1G18840.1 | chr1:6501068-6503435 REVERSE LENGTH=573 53 3e-07
AT4G29150.1 | chr4:14378770-14380340 FORWARD LENGTH=400 52 7e-07
>AT4G23060.1 | chr4:12087283-12090408 FORWARD LENGTH=485
Length = 484
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 151/356 (42%), Gaps = 63/356 (17%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCMHXXXXXX-------- 179
++IQ+ FRGY GLV+LQA+VRG+I R++ + LR MH
Sbjct: 171 IKIQSIFRGYLAKRALRALKGLVRLQAIVRGHIERKRMSVHLRRMHALVRAQARVRATRV 230
Query: 180 -----XXXXXXXXXXSQHVSAHPGPPTPEKYDQATHEGVPXXXXXXXXXXXXXXXXXXER 234
S H +PGPPTPEK + +
Sbjct: 231 IVTPESSSSQSNNTKSSHFQ-NPGPPTPEKLEHSI-------------SSRSSKLAHSHL 276
Query: 235 LTRERSESCGRNWLDKWVEERYLDDEKNAKILEVDTGKPGXXXXXXXXXXXXXXXXXXXM 294
R S++ N L E + ++ KIL++D
Sbjct: 277 FKRNGSKASDNNRLYPAHRETFSATDEEEKILQID----------------------RKH 314
Query: 295 TSEQKSRSYATMPESPSKDSTTAQQSVPSPPSVGMAEALSPLLMAVDI-AELC---DSPQ 350
S R+ M S A S P A SP +I ++ C +SPQ
Sbjct: 315 ISSYTRRNRPDMFYSSHLILDNAGLSEPV-----FATPFSPSSSHEEITSQFCTAENSPQ 369
Query: 351 FFSATSRPGSSRSRAFTPTKSECSRSLFGGYSDYPNYMANTESFRAKARSQSAPKQRPQ- 409
+SATSR S A + S+C++S G D+P+YMA TES RAKARS SAPK RPQ
Sbjct: 370 LYSATSRSKRSAFTASSIAPSDCTKSCCDG--DHPSYMACTESSRAKARSASAPKSRPQL 427
Query: 410 -YEKSSSLRKASAHAFGPGSCAPVAQRTTASLHSKFTNKAYPGSGRLDRLGMPVKY 464
YE+ SS R G Q+ +A LH+ F NKAYPGSGRLDRLGMP+ Y
Sbjct: 428 FYERPSSKRFGFVDLPYCGDTKSGPQKGSA-LHTSFMNKAYPGSGRLDRLGMPIGY 482
>AT5G07240.1 | chr5:2272028-2274051 FORWARD LENGTH=402
Length = 401
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 108/291 (37%), Gaps = 76/291 (26%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCMHXXXXXXXXXXXXXX 187
++IQ+AFRGY LVKLQALV+G+IVR+Q A+ LR M
Sbjct: 110 MKIQSAFRGYLARRALRALKALVKLQALVKGHIVRKQTADMLRRMQTLVRLQARARASRS 169
Query: 188 XXSQHVSAHP----GPPTPEKYDQATHEGVPXXXXXXXXXXXXXXXXXXERLTRERSESC 243
S+HP P +P+ + RS
Sbjct: 170 SHVS-DSSHPPTLMIPSSPQSFH----------ARCVSEAEYSKVIAMDHHHNNHRSPMG 218
Query: 244 GRNWLDKWVEERYL-----DDEKNAKILEVDTGKPGXXXXXXXXXXXXXXXXXXXMTSEQ 298
LD+W E L +E + KILEVDT KP
Sbjct: 219 SSRLLDQWRTEESLWSAPKYNEDDDKILEVDTWKPH------------------------ 254
Query: 299 KSRSYATMPESPSKDSTTAQQSVPSPPSVGMAEALSPLLMAVDIAELCDSPQFFSATSRP 358
ESP K + S+ P SV + L + +P
Sbjct: 255 -------FRESPRK-----RGSLVVPTSVENSPQLRSRTGSSSGGSRRKTP--------- 293
Query: 359 GSSRSRAFTPTKSECSRSLFGGYSDYPNYMANTESFRAKARSQSAPKQRPQ 409
FTP +SE + GY +PNYMANTES++AK RSQSAP+QR Q
Sbjct: 294 -------FTPARSEYE--YYSGY--HPNYMANTESYKAKVRSQSAPRQRLQ 333
>AT2G26180.1 | chr2:11143433-11144982 REVERSE LENGTH=417
Length = 416
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 31/46 (67%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCMH 173
+RIQ AFRG+ G+V+LQALVRG VR+QAA TLRCM
Sbjct: 88 IRIQTAFRGFLARRALRALKGIVRLQALVRGRQVRKQAAVTLRCMQ 133
>AT5G62070.1 | chr5:24930057-24932451 REVERSE LENGTH=404
Length = 403
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 11/74 (14%)
Query: 347 DSPQFFSATSRPGSSRSRAFTPT-KSE----CSRSLFGGYSDYPNYMANTESFRAKARSQ 401
+SPQ S+ GS R FTPT +SE C+ + GY +PNYMANTES++AK RSQ
Sbjct: 281 NSPQVGSS----GSRRRTPFTPTSRSEYSWGCNNYYYSGY--HPNYMANTESYKAKVRSQ 334
Query: 402 SAPKQRPQYEKSSS 415
SAPKQR + +S
Sbjct: 335 SAPKQRVEVSNETS 348
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCM 172
++IQ+AFRGY LVKLQALVRG+IVR+Q A+ LR M
Sbjct: 121 MKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRM 165
>AT3G22190.1 | chr3:7831280-7833512 REVERSE LENGTH=423
Length = 422
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%)
Query: 129 RIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCMH 173
RIQ A+RG+ GLV+LQALVRG+ VR+QAA TLRCM
Sbjct: 93 RIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQ 137
>AT1G01110.2 | chr1:52239-54494 FORWARD LENGTH=528
Length = 527
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 30/46 (65%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCMH 173
V IQ +FRGY GLVKLQALVRG+ VR+QA TLRCM
Sbjct: 125 VVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQ 170
>AT4G00820.1 | chr4:349300-351307 FORWARD LENGTH=535
Length = 534
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 29/46 (63%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCMH 173
V IQ FRGY GLVKLQALVRG+ VR+QA TLRCM
Sbjct: 136 VVIQTGFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQ 181
>AT3G16490.1 | chr3:5603962-5605489 REVERSE LENGTH=390
Length = 389
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 66 RAYTASDEGDDEQSKRXXXXXXXXXXXXXXXXXXXXXXXXXXRLTSSGRCXXXXXXXXXX 125
R Y A E D EQ+K RLTS+GR
Sbjct: 50 RTYLA--ETDKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSNGRSGGYSGNAMER 107
Query: 126 -XXVRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCM 172
V+IQ+ F+GY GLVKLQALVRG +VR++AAETL M
Sbjct: 108 WAAVKIQSVFKGYLARKALRALKGLVKLQALVRGYLVRKRAAETLHSM 155
>AT4G14750.1 | chr4:8470449-8471903 FORWARD LENGTH=388
Length = 387
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCM 172
++IQA +R + GLVKLQALVRG++VR+QA TLRCM
Sbjct: 109 IKIQACYRSHLARKALRALKGLVKLQALVRGHLVRKQATATLRCM 153
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 381 YSDYPNYMANTESFRAKARSQSAPKQRP--QYEKSSSLRKASA 421
Y +PNYMANT+S +AKARSQSAPKQRP YEK S R+ S+
Sbjct: 262 YPLFPNYMANTQSSKAKARSQSAPKQRPPEIYEKQMSGRRRSS 304
>AT4G10640.1 | chr4:6571999-6574312 FORWARD LENGTH=424
Length = 423
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 29/45 (64%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCM 172
+ IQ AFRGY G+VKLQALVRGN VR QA TLRC+
Sbjct: 104 IIIQTAFRGYLSRRALRALKGIVKLQALVRGNNVRNQAKLTLRCI 148
>AT1G18840.1 | chr1:6501068-6503435 REVERSE LENGTH=573
Length = 572
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCM 172
V +QAA+RGY G+++LQAL+RG++VRRQA TL C+
Sbjct: 113 VTVQAAYRGYLARRAFKILKGIIRLQALIRGHMVRRQAVSTLCCV 157
>AT4G29150.1 | chr4:14378770-14380340 FORWARD LENGTH=400
Length = 399
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 128 VRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCMH 173
++IQ AFRGY G+VK+QALVRG +VR QAA TLR M
Sbjct: 135 MQIQCAFRGYLARKALRALRGVVKIQALVRGFLVRNQAAATLRSME 180
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.127 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,582,799
Number of extensions: 240734
Number of successful extensions: 627
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 18
Length of query: 464
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,310,137
Effective search space: 3008269594
Effective search space used: 3008269594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)