BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0569900 Os04g0569900|AK100392
         (464 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0569900  IQ calmodulin-binding region domain containing...   658   0.0  

>Os04g0569900 IQ calmodulin-binding region domain containing protein
          Length = 464

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/464 (73%), Positives = 341/464 (73%)

Query: 1   MGWASRWLRXXXXXXXXPNSGSGDPKPAREKKRWGFGKSFREKXXXXXXXXXXXXXXVQR 60
           MGWASRWLR        PNSGSGDPKPAREKKRWGFGKSFREK              VQR
Sbjct: 1   MGWASRWLRGLLGGGKKPNSGSGDPKPAREKKRWGFGKSFREKSPAHPPPPPPPSAAVQR 60

Query: 61  AVTPRRAYTASDEGDDEQSKRXXXXXXXXXXXXXXXXXXXXXXXXXXRLTSSGRCXXXXX 120
           AVTPRRAYTASDEGDDEQSKR                          RLTSSGRC     
Sbjct: 61  AVTPRRAYTASDEGDDEQSKRAIAVAAATAAVAEAAVAAAQAAAAVVRLTSSGRCAPAAA 120

Query: 121 XXXXXXXVRIQAAFRGYXXXXXXXXXXGLVKLQALVRGNIVRRQAAETLRCMHXXXXXXX 180
                  VRIQAAFRGY          GLVKLQALVRGNIVRRQAAETLRCMH       
Sbjct: 121 KREEYAAVRIQAAFRGYLARRALKALRGLVKLQALVRGNIVRRQAAETLRCMHALVRVQR 180

Query: 181 XXXXXXXXXSQHVSAHPGPPTPEKYDQATHEGVPXXXXXXXXXXXXXXXXXXERLTRERS 240
                    SQHVSAHPGPPTPEKYDQATHEGVP                  ERLTRERS
Sbjct: 181 RARACRAIRSQHVSAHPGPPTPEKYDQATHEGVPKHGRSGSLKGSSSKTPGSERLTRERS 240

Query: 241 ESCGRNWLDKWVEERYLDDEKNAKILEVDTGKPGXXXXXXXXXXXXXXXXXXXMTSEQKS 300
           ESCGRNWLDKWVEERYLDDEKNAKILEVDTGKPG                   MTSEQKS
Sbjct: 241 ESCGRNWLDKWVEERYLDDEKNAKILEVDTGKPGRHASRRRSGSHHHHSSCSSMTSEQKS 300

Query: 301 RSYATMPESPSKDSTTAQQSVPSPPSVGMAEALSPLLMAVDIAELCDSPQFFSATSRPGS 360
           RSYATMPESPSKDSTTAQQSVPSPPSVGMAEALSPLLMAVDIAELCDSPQFFSATSRPGS
Sbjct: 301 RSYATMPESPSKDSTTAQQSVPSPPSVGMAEALSPLLMAVDIAELCDSPQFFSATSRPGS 360

Query: 361 SRSRAFTPTKSECSRSLFGGYSDYPNYMANTESFRAKARSQSAPKQRPQYEKSSSLRKAS 420
           SRSRAFTPTKSECSRSLFGGYSDYPNYMANTESFRAKARSQSAPKQRPQYEKSSSLRKAS
Sbjct: 361 SRSRAFTPTKSECSRSLFGGYSDYPNYMANTESFRAKARSQSAPKQRPQYEKSSSLRKAS 420

Query: 421 AHAFGPGSCAPVAQRTTASLHSKFTNKAYPGSGRLDRLGMPVKY 464
           AHAFGPGSCAPVAQRTTASLHSKFTNKAYPGSGRLDRLGMPVKY
Sbjct: 421 AHAFGPGSCAPVAQRTTASLHSKFTNKAYPGSGRLDRLGMPVKY 464



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.127    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,685,586
Number of extensions: 418975
Number of successful extensions: 1272
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1268
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 360
Effective length of database: 11,605,545
Effective search space: 4177996200
Effective search space used: 4177996200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)