Os04g0555700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin-depolymerizing factor (ADF).
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Os04g0555700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin-depolymerizing factor (ADF).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 365.14 | 0.898 | 3.19 | -0.358 | 0.176 | -0.148 | -1.96 | -5.09 | -0.369 | 4.12 | 1000 | 1490 | -- | -- |
| 368.47 | 0.894 | 3.24 | -0.621 | 0.182 | -1.1 | -1.98 | -- | -0.363 | 3.64 | 999.2 | 1458 | -- | -- |
| 375.98 | 0.903 | 3.19 | -0.335 | 0.165 | -0.143 | -- | -5.15 | -0.359 | 3.89 | 1000 | 1535 | -- | -- |
| 379.71 | 0.908 | 3.24 | -0.595 | 0.17 | -1.14 | -- | -- | -0.351 | 3.55 | 999.2 | 1503 | -- | -- |
| 377.46 | 0.905 | 3.19 | -0.321 | -- | -0.115 | -- | -5.29 | -0.355 | -- | 1000 | 1535 | -- | -- |
| 390.1 | 0.926 | 3.26 | -0.461 | 0.175 | -- | -1.99 | -- | -0.423 | 4.12 | -- | -- | -- | -- |
| 401.28 | 0.938 | 3.25 | -0.439 | 0.163 | -- | -- | -- | -0.412 | 3.53 | -- | -- | -- | -- |
| 381.3 | 0.909 | 3.24 | -0.592 | -- | -1.14 | -- | -- | -0.35 | -- | 999.2 | 1490 | -- | -- |
| 388.82 | 0.918 | 3.22 | -- | 0.156 | -1 | -- | -- | -0.292 | 3.61 | 999.3 | 1510 | -- | -- |
| 402.76 | 0.938 | 3.25 | -0.432 | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
| 406.37 | 0.943 | 3.24 | -- | 0.154 | -- | -- | -- | -0.363 | 3.55 | -- | -- | -- | -- |
| 390.13 | 0.92 | 3.23 | -- | -- | -1.01 | -- | -- | -0.29 | -- | 999.1 | 1458 | -- | -- |
| 407.7 | 0.942 | 3.24 | -- | -- | -- | -- | -- | -0.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 355.68 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 13 | 2 |
| 2 | 355.85 | wind | 5 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 5 | 356.02 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 4 | 7 |
| 6 | 356.13 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 8 | 356.51 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 14 |
| 11 | 356.76 | wind | 7 | 14400 | > th | dose independent | rect. | 23 | 22 |
| 12 | 356.79 | wind | 3 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 14 | 356.82 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 22 |
| 21 | 356.91 | wind | 7 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 27 | 356.99 | wind | 7 | 14400 | > th | dose independent | rect. | 13 | 19 |
| 28 | 357.01 | wind | 7 | 14400 | < th | dose independent | rect. | 24 | 21 |
| 32 | 357.04 | wind | 7 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 46 | 357.11 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 61 | 357.19 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 63 | 357.20 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 69 | 357.22 | wind | 7 | 14400 | > th | dose independent | rect. | 13 | 15 |
| 71 | 357.22 | wind | 7 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 72 | 357.23 | wind | 7 | 14400 | > th | dose independent | sin | 18 | NA |
| 76 | 357.23 | wind | 7 | 14400 | > th | dose dependent | rect. | 13 | 22 |
| 78 | 357.24 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 79 | 357.24 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 20 |
| 87 | 357.27 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 89 | 357.28 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 21 |
| 94 | 357.29 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 7 |
| 97 | 357.29 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 17 |
| 100 | 357.30 | wind | 7 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 122 | 357.35 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 15 | 2 |
| 126 | 357.35 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 141 | 357.37 | wind | 5 | 14400 | > th | dose dependent | sin | 19 | NA |
| 142 | 357.38 | wind | 7 | 14400 | > th | dose independent | no | NA | NA |
| 143 | 357.38 | wind | 7 | 14400 | < th | dose independent | sin | 19 | NA |
| 159 | 357.41 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 166 | 357.41 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 167 | 357.42 | wind | 7 | 14400 | < th | dose independent | rect. | 13 | 19 |
| 245 | 357.53 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 21 |
| 247 | 357.53 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 255 | 357.55 | wind | 7 | 14400 | < th | dose independent | rect. | 13 | 15 |
| 320 | 357.63 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 7 |
| 337 | 357.65 | wind | 7 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 351 | 357.67 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 10 |
| 375 | 357.69 | wind | 7 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 386 | 357.72 | wind | 7 | 14400 | < th | dose independent | no | NA | NA |
| 393 | 357.72 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 509 | 357.93 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 1 | 12 |
| 552 | 358.01 | wind | 7 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 583 | 358.08 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 23 | 22 |
| 585 | 358.08 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 595 | 358.10 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 621 | 358.16 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 692 | 358.33 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 694 | 358.34 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 702 | 358.34 | wind | 3 | 14400 | > th | dose dependent | rect. | 10 | 7 |
| 755 | 358.44 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 765 | 358.46 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 13 |
| 776 | 358.48 | wind | 7 | 14400 | > th | dose dependent | no | NA | NA |
| 782 | 358.48 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 823 | 358.55 | wind | 7 | 14400 | > th | dose dependent | rect. | 7 | 23 |