Os04g0555500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os04g0555500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.58 | 0.238 | 10.3 | 1.13 | 0.589 | -0.518 | -0.32 | 2.76 | 0.477 | 1.35 | 24.45 | 1283 | -- | -- |
| 28.43 | 0.25 | 10.4 | 0.414 | 0.406 | -0.431 | -0.257 | -- | 0.316 | 1.06 | 17.21 | 8573 | -- | -- |
| 25.97 | 0.237 | 10.3 | 1.13 | 0.585 | -0.512 | -- | 2.68 | 0.47 | 1.32 | 24.63 | 1304 | -- | -- |
| 28.67 | 0.251 | 10.4 | 0.426 | 0.41 | -0.484 | -- | -- | 0.317 | 0.989 | 14.34 | 8571 | -- | -- |
| 36.9 | 0.284 | 10.4 | 0.664 | -- | -0.785 | -- | 1.85 | 0.379 | -- | 24.63 | 1304 | -- | -- |
| 30.74 | 0.26 | 10.4 | 0.325 | 0.541 | -- | -0.213 | -- | 0.248 | 1.35 | -- | -- | -- | -- |
| 30.92 | 0.26 | 10.4 | 0.332 | 0.541 | -- | -- | -- | 0.249 | 1.32 | -- | -- | -- | -- |
| 35.58 | 0.279 | 10.4 | 0.501 | -- | -0.759 | -- | -- | 0.383 | -- | 20.07 | 3160 | -- | -- |
| 32.71 | 0.266 | 10.4 | -- | 0.581 | -0.209 | -- | -- | 0.241 | 0.974 | 22.39 | 835 | -- | -- |
| 48.99 | 0.327 | 10.4 | 0.353 | -- | -- | -- | -- | 0.261 | -- | -- | -- | -- | -- |
| 33.83 | 0.272 | 10.4 | -- | 0.547 | -- | -- | -- | 0.212 | 1.34 | -- | -- | -- | -- |
| 41.92 | 0.303 | 10.4 | -- | -- | -0.653 | -- | -- | 0.312 | -- | 20.07 | 3160 | -- | -- |
| 52.28 | 0.338 | 10.4 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 7 | 25.00 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 8 | 25.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 12 |
| 19 | 25.04 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 25 | 25.05 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 6 |
| 31 | 25.08 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 33 | 25.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 34 | 25.10 | temperature | 25 | 1440 | > th | dose independent | sin | 14 | NA |
| 37 | 25.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 53 | 25.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 57 | 25.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 74 | 25.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 79 | 25.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 90 | 25.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 150 | 25.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 238 | 25.21 | temperature | 25 | 1440 | < th | dose independent | sin | 14 | NA |
| 245 | 25.22 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 262 | 25.23 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 283 | 25.24 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 405 | 25.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 406 | 25.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 441 | 25.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 460 | 25.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 15 |
| 572 | 25.60 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 719 | 25.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 777 | 25.83 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 813 | 25.87 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 20 |
| 832 | 25.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 870 | 25.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 883 | 25.95 | humidity | 90 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 950 | 26.03 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 951 | 26.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 957 | 26.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 970 | 26.04 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 979 | 26.05 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 990 | 26.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 20 |