BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0555500 Os04g0555500|AK108782
(477 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0555500 WD40-like domain containing protein 923 0.0
>Os04g0555500 WD40-like domain containing protein
Length = 477
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/477 (94%), Positives = 453/477 (94%)
Query: 1 FSHGGAGIPCSRVDITCGLPHCFLHGLTLLFAVQTIFRNPSELKSYLLPNPDRCNVPAST 60
FSHGGAGIPCSRVDITCGLPHCFLHGLTLLFAVQTIFRNPSELKSYLLPNPDRCNVPAST
Sbjct: 1 FSHGGAGIPCSRVDITCGLPHCFLHGLTLLFAVQTIFRNPSELKSYLLPNPDRCNVPAST 60
Query: 61 MFXXXXXXXXXXXXXPAAHVALHHWQPNTPDGQGTPFLFHHGRNAANSTGGALMRIFKGS 120
MF PAAHVALHHWQPNTPDGQGTPFLFHHGRNAANSTGGALMRIFKGS
Sbjct: 61 MFVSNDSIVVVDVNVPAAHVALHHWQPNTPDGQGTPFLFHHGRNAANSTGGALMRIFKGS 120
Query: 121 ASSGEDYDFPRAIAFAASGIRSSAVVAVTCDKEIITGGHADGSVKLISPDGAKTIETATG 180
ASSGEDYDFPRAIAFAASGIRSSAVVAVTCDKEIITGGHADGSVKLISPDGAKTIETATG
Sbjct: 121 ASSGEDYDFPRAIAFAASGIRSSAVVAVTCDKEIITGGHADGSVKLISPDGAKTIETATG 180
Query: 181 HLAPVTCLALSHDSNYLVTGSRDTTVILWRIHQAGSLHKKNAXXXXXXXXXXXRSPSVSN 240
HLAPVTCLALSHDSNYLVTGSRDTTVILWRIHQAGSLHKKNA RSPSVSN
Sbjct: 181 HLAPVTCLALSHDSNYLVTGSRDTTVILWRIHQAGSLHKKNAPEPPPTTPTTPRSPSVSN 240
Query: 241 LTEIRRRRIEGPMHVLRGHLEEVTSCSVSPDLGLVVSSSNMSGVLLHSLRTGRLIRKLNV 300
LTEIRRRRIEGPMHVLRGHLEEVTSCSVSPDLGLVVSSSNMSGVLLHSLRTGRLIRKLNV
Sbjct: 241 LTEIRRRRIEGPMHVLRGHLEEVTSCSVSPDLGLVVSSSNMSGVLLHSLRTGRLIRKLNV 300
Query: 301 AEAHAVCLSSQGVILVWNESKKRLSTFTVNGLPIATTVLSPFCGRVSCIEISTDGHFALM 360
AEAHAVCLSSQGVILVWNESKKRLSTFTVNGLPIATTVLSPFCGRVSCIEISTDGHFALM
Sbjct: 301 AEAHAVCLSSQGVILVWNESKKRLSTFTVNGLPIATTVLSPFCGRVSCIEISTDGHFALM 360
Query: 361 GTCSSSNYKCEDSTETGDHEPNEPNGKDGISKQAETRQSVHVPSVCFVDLHKLKVFHTME 420
GTCSSSNYKCEDSTETGDHEPNEPNGKDGISKQAETRQSVHVPSVCFVDLHKLKVFHTME
Sbjct: 361 GTCSSSNYKCEDSTETGDHEPNEPNGKDGISKQAETRQSVHVPSVCFVDLHKLKVFHTME 420
Query: 421 LGKGQDVTAIALNKENTNLLLSTADKQLIVFTDPALSLKVVDQMLRLGWEGDGLLQS 477
LGKGQDVTAIALNKENTNLLLSTADKQLIVFTDPALSLKVVDQMLRLGWEGDGLLQS
Sbjct: 421 LGKGQDVTAIALNKENTNLLLSTADKQLIVFTDPALSLKVVDQMLRLGWEGDGLLQS 477
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,749,955
Number of extensions: 686396
Number of successful extensions: 2035
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2036
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 372
Effective length of database: 11,553,331
Effective search space: 4297839132
Effective search space used: 4297839132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)