BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0555500 Os04g0555500|AK108782
(477 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45540.2 | chr2:18757881-18772229 REVERSE LENGTH=3002 452 e-127
AT1G58230.1 | chr1:21566331-21578865 FORWARD LENGTH=2605 89 4e-18
AT4G02730.1 | chr4:1207759-1209066 FORWARD LENGTH=334 55 9e-08
AT1G18080.1 | chr1:6222325-6223901 FORWARD LENGTH=328 51 1e-06
>AT2G45540.2 | chr2:18757881-18772229 REVERSE LENGTH=3002
Length = 3001
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 250/458 (54%), Positives = 314/458 (68%), Gaps = 21/458 (4%)
Query: 19 LPHCFLHGLTLLFAVQTIFRNPSELKSYLLPNPDRCNVPASTMFXXXXXXXXXXXXXPAA 78
+PH L + +QTIFRNP E+K Y + P+RCN+PAS + PAA
Sbjct: 2559 VPHMKRMPLKDVLHMQTIFRNPKEIKPYTVQTPERCNLPASAIQASSDSVVIVDMNVPAA 2618
Query: 79 HVALHHWQPNTPDGQGTPFLFHHGRNAANSTGGALMRIFKGSASSGE-DYDFPRAIAFAA 137
VA H WQPNTPDGQGTPFLFHHG+ ST G+LMR+FKG ASSG D+ FP+A AFA+
Sbjct: 2619 RVAQHKWQPNTPDGQGTPFLFHHGKATTTSTSGSLMRMFKGPASSGTGDWQFPQAQAFAS 2678
Query: 138 SGIRSSAVVAVTCDKEIITGGHADGSVKLISPDGAKTIETATGHLAPVTCLALSHDSNYL 197
SGIRSS+V+A+T D EIITGGHAD S+KL+S DGAKT+ETA GH APVTCLALS D+N+L
Sbjct: 2679 SGIRSSSVIAITSDGEIITGGHADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFL 2738
Query: 198 VTGSRDTTVILWRIHQAGSLHKKNAXXXXXXXXXXXRSPSVSNLTEI-----RRRRIEGP 252
VTGSRD+TV+LWRIH+A + + S S +NL ++ R+EGP
Sbjct: 2739 VTGSRDSTVLLWRIHKA--FTSRTSVSEPSTGSGAPSSTSNTNLANTLANKGKKCRLEGP 2796
Query: 253 MHVLRGHLEEVTSCSVSPDLGLVVSSSNMSGVLLHSLRTGRLIRKLNVAEAHAVCLSSQG 312
+ VLRGH E+ C VS D G+VVSSS S VLLHS+R GRLIR+L +A ++C+SS G
Sbjct: 2797 IQVLRGHRRELVCCCVSSDQGVVVSSSESSDVLLHSIRKGRLIRRLVGVKADSLCISSDG 2856
Query: 313 VILVWNESKKRLSTFTVNGLPIATTVLSPFCGRVSCIEISTDGHFALMGTCSSSNYKCED 372
VI+ W+ S+ +S FT+NG+ IA FC V C+EIS DG AL+G S SN
Sbjct: 2857 VIMAWSSSEGSISVFTINGVLIAKAKFPLFCS-VGCMEISMDGQNALIGMNSCSNSDYSS 2915
Query: 373 STETGDHEPNEPNGKDGISKQAETRQSVHVPSVCFVDLHKLKVFHTMELGKGQDVTAIAL 432
S +T KD SK+ E R V PS+CF++L+ L+VFH ++LG+GQD+TA+AL
Sbjct: 2916 SNDT---------SKD--SKEIE-RLDVPSPSICFLNLYTLQVFHVLKLGQGQDITALAL 2963
Query: 433 NKENTNLLLSTADKQLIVFTDPALSLKVVDQMLRLGWE 470
N +NTNLL+ST DKQLI+FTDPALSLKVVDQML+LGWE
Sbjct: 2964 NVDNTNLLVSTEDKQLIIFTDPALSLKVVDQMLKLGWE 3001
>AT1G58230.1 | chr1:21566331-21578865 FORWARD LENGTH=2605
Length = 2604
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 27/226 (11%)
Query: 139 GIRSSAVVAVTCDKEIITGGHADGSVKLISPDGAKTIETATGHLAPVTCLALSHDSNYLV 198
G + A + + + +++ G+ + S +IS + +++ H V+C+A++ DS L
Sbjct: 2327 GSQCFAAMQMPLENFLVSCGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILA 2386
Query: 199 TGSRDTTVILWRIHQAGSLHKKNAXXXXXXXXXXXRSPSVSNL-TEIRRRRI---EGPMH 254
TGS DTTV++W I + + K+ V N E+ R+ I + P H
Sbjct: 2387 TGSYDTTVMVWDILRMRTPEKR-----------------VRNTHAEVLRKDIVIADAPSH 2429
Query: 255 VLRGHLEEVTSCSVSPDLGLVVSSSNMSGVLLHSLRTGRLIRKLNVAEAHAV---CLSSQ 311
+L GH + +T VS DL +V+S S + H+LR GR IR L AV S
Sbjct: 2430 ILCGHDDIITCLYVSTDLDIVISGSKDGTCVFHTLREGRYIRSLKHPSGSAVSKLAASHH 2489
Query: 312 GVILVWNESKKRLSTFTVNGLPIATTVLSPFCGRVSCIEISTDGHF 357
G I+++ + L +++NG +A+ S GR++C+E+S G F
Sbjct: 2490 GRIVLYGDDDLSLHLYSINGKHLAS---SESNGRINCLELSKCGEF 2532
>AT4G02730.1 | chr4:1207759-1209066 FORWARD LENGTH=334
Length = 333
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 21/223 (9%)
Query: 162 GSVKLISPDGAKTIETATGHLAPVTCLALSHDSNYLVTGSRDTTVILWRIHQAGSLHK-- 219
G+V + P + ++T GH A ++C+ S+D N L + S D T+ILW +H+
Sbjct: 25 GNVPIYKP--YRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYE 82
Query: 220 --KNAXXXXXXXXXXXRSPSVSNLTEIRRRRIEGP---MHVLRGHLEEVTSCSVSPDLGL 274
+ + S S+ +R P + VLRGH V + +P L
Sbjct: 83 GHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNL 142
Query: 275 VVSSSNMSGVLLHSLRTGRLIRKLNVAEAHAVCLSS-----QGVILVWNESKKRLSTFTV 329
+VS S + + ++TG+ +R + +AH++ +SS G ++V +
Sbjct: 143 IVSGSFDETIRIWEVKTGKCVRMI---KAHSMPISSVHFNRDGSLIVSASHDGSCKIWDA 199
Query: 330 NGLPIATTVLSPFCGRVSCIEISTDGHFALMGTCSS----SNY 368
T++ VS + S +G F L+ T S SNY
Sbjct: 200 KEGTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLSNY 242
>AT1G18080.1 | chr1:6222325-6223901 FORWARD LENGTH=328
Length = 327
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 24/182 (13%)
Query: 146 VAVTCDKEIITGGHADGSVKLISPDGAKTIETATGHLAPVTCLALSHDSNYLVTGSRDTT 205
V ++ D + G DG ++L + GH V +A S D+ +V+ SRD T
Sbjct: 69 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 128
Query: 206 VILWR--------IHQAGSLHKK---------NAXXXXXXXXXXXRSPSVSNLTEIRRRR 248
+ LW I + G H+ N ++ V NL+ + R
Sbjct: 129 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR- 187
Query: 249 IEGPMHVLRGHLEEVTSCSVSPDLGLVVSSSNMSGVLLHSLRTGRLIRKLNVAEA-HAVC 307
L GH V++ +VSPD L S VLL L G+ + L HA+C
Sbjct: 188 -----STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 242
Query: 308 LS 309
S
Sbjct: 243 FS 244
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,364,173
Number of extensions: 416320
Number of successful extensions: 1570
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1563
Number of HSP's successfully gapped: 6
Length of query: 477
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 375
Effective length of database: 8,310,137
Effective search space: 3116301375
Effective search space used: 3116301375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)