Os04g0544500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Similarities with spP40209 Saccharomyces cerevisiae YMR136w GAT2.
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Os04g0544500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Similarities with spP40209 Saccharomyces cerevisiae YMR136w GAT2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.12 | 0.301 | 10.8 | -1.57 | 0.502 | -1.13 | 0.645 | 0.474 | -0.231 | 6.19 | 16.98 | 6 | -- | -- |
| 41.33 | 0.299 | 10.8 | -1.64 | 0.497 | -1.15 | 0.605 | -- | -0.25 | 6.27 | 16.79 | 6 | -- | -- |
| 42.1 | 0.302 | 10.8 | -1.58 | 0.509 | -1.12 | -- | 0.352 | -0.241 | 6.02 | 16.96 | 5 | -- | -- |
| 42.18 | 0.302 | 10.8 | -1.63 | 0.503 | -1.15 | -- | -- | -0.254 | 6.02 | 16.41 | 6 | -- | -- |
| 50.2 | 0.33 | 10.8 | -1.52 | -- | -1.4 | -- | 0.146 | -0.208 | -- | 17.59 | 153 | -- | -- |
| 56.55 | 0.353 | 10.9 | -1.87 | 0.767 | -- | 0.528 | -- | -0.428 | 4.61 | -- | -- | -- | -- |
| 57.26 | 0.354 | 10.9 | -1.87 | 0.769 | -- | -- | -- | -0.431 | 4.5 | -- | -- | -- | -- |
| 50.2 | 0.33 | 10.8 | -1.54 | -- | -1.39 | -- | -- | -0.201 | -- | 17.71 | 160 | -- | -- |
| 104.69 | 0.477 | 10.8 | -- | 0.311 | -2.03 | -- | -- | 0.016 | 7.69 | 14.05 | 79 | -- | -- |
| 88.86 | 0.44 | 10.9 | -1.84 | -- | -- | -- | -- | -0.41 | -- | -- | -- | -- | -- |
| 149.73 | 0.572 | 10.8 | -- | 0.734 | -- | -- | -- | -0.222 | 4.56 | -- | -- | -- | -- |
| 107.64 | 0.483 | 10.8 | -- | -- | -2.13 | -- | -- | 0.0271 | -- | 11.36 | 182 | -- | -- |
| 178.48 | 0.624 | 10.8 | -- | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.03 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 4 | 40.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 25 | 41.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 43 | 41.30 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 44 | 41.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 58 | 41.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 23 |
| 66 | 41.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 68 | 41.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 69 | 41.56 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 76 | 41.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 79 | 41.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 82 | 41.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 94 | 41.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 103 | 41.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 115 | 41.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 131 | 42.10 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 133 | 42.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 143 | 42.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 151 | 42.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 155 | 42.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 168 | 42.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 171 | 42.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 188 | 42.46 | temperature | 15 | 10 | > th | dose dependent | sin | 22 | NA |
| 223 | 42.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 243 | 42.80 | temperature | 30 | 30 | < th | dose dependent | sin | 22 | NA |
| 244 | 42.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 252 | 42.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 256 | 42.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 724 | 44.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 755 | 44.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 825 | 45.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 846 | 45.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 17 |
| 856 | 45.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 917 | 45.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 14 |
| 946 | 45.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 957 | 45.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 985 | 45.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |