BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0544500 Os04g0544500|AK070729
(450 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0544500 Similar to Similarities with spP40209 Saccharo... 831 0.0
>Os04g0544500 Similar to Similarities with spP40209 Saccharomyces cerevisiae
YMR136w GAT2
Length = 450
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/450 (90%), Positives = 406/450 (90%)
Query: 1 MGKQGPCRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTPMHARDDIDAEEPR 60
MGKQGPCRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTPMHARDDIDAEEPR
Sbjct: 1 MGKQGPCRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTPMHARDDIDAEEPR 60
Query: 61 ASXXXXXXXXXXXXXXXXXNPSHITMENGPFSDQNFRKMGDPDLXXXXXXXXXXXXXXXC 120
AS NPSHITMENGPFSDQNFRKMGDPDL C
Sbjct: 61 ASKLKPPTLKLKEQKQLKKNPSHITMENGPFSDQNFRKMGDPDLSNRSGSGSALSYSESC 120
Query: 121 APYGTADASEMTASAQSHAWESLVPSKRRSCVTRPKPSQMEKLAKDLNSIMHEEQLLYLS 180
APYGTADASEMTASAQSHAWESLVPSKRRSCVTRPKPSQMEKLAKDLNSIMHEEQLLYLS
Sbjct: 121 APYGTADASEMTASAQSHAWESLVPSKRRSCVTRPKPSQMEKLAKDLNSIMHEEQLLYLS 180
Query: 181 GSSEEDLIYHSATPVDSFEMGYGSMLLRPNXXXXXXXXXXXXIPADNKSYITSESYSGSV 240
GSSEEDLIYHSATPVDSFEMGYGSMLLRPN IPADNKSYITSESYSGSV
Sbjct: 181 GSSEEDLIYHSATPVDSFEMGYGSMLLRPNSKSLEEESEASSIPADNKSYITSESYSGSV 240
Query: 241 SFVYSESKATSNQNVITEQPKKFLVQTSDNARRANLHTENQDTLENANSPLVSLHMEGKD 300
SFVYSESKATSNQNVITEQPKKFLVQTSDNARRANLHTENQDTLENANSPLVSLHMEGKD
Sbjct: 241 SFVYSESKATSNQNVITEQPKKFLVQTSDNARRANLHTENQDTLENANSPLVSLHMEGKD 300
Query: 301 SEETRVKTSASNRLTKSTMNPLKRPHDTHFQSSVELRGTMRSPKRVSKYGDAMGLKCQAS 360
SEETRVKTSASNRLTKSTMNPLKRPHDTHFQSSVELRGTMRSPKRVSKYGDAMGLKCQAS
Sbjct: 301 SEETRVKTSASNRLTKSTMNPLKRPHDTHFQSSVELRGTMRSPKRVSKYGDAMGLKCQAS 360
Query: 361 FMPKPGNGKDLACSDRALNLFMLPPDKLSMLVPPQYANTDSDQDLLLDVPLNARHPEAEL 420
FMPKPGNGKDLACSDRALNLFMLPPDKLSMLVPPQYANTDSDQDLLLDVPLNARHPEAEL
Sbjct: 361 FMPKPGNGKDLACSDRALNLFMLPPDKLSMLVPPQYANTDSDQDLLLDVPLNARHPEAEL 420
Query: 421 LCQPSQLSSVAHSSTSEAGNAGGEGRLKQP 450
LCQPSQLSSVAHSSTSEAGNAGGEGRLKQP
Sbjct: 421 LCQPSQLSSVAHSSTSEAGNAGGEGRLKQP 450
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.126 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,138,792
Number of extensions: 601584
Number of successful extensions: 1118
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1119
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 346
Effective length of database: 11,605,545
Effective search space: 4015518570
Effective search space used: 4015518570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)