BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0544500 Os04g0544500|AK070729
(450 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47140.1 | chr5:19145108-19147303 FORWARD LENGTH=471 170 1e-42
AT4G17570.2 | chr4:9784329-9786644 REVERSE LENGTH=527 160 9e-40
AT3G45170.1 | chr3:16537538-16538232 FORWARD LENGTH=205 56 3e-08
AT5G66320.1 | chr5:26496208-26497309 REVERSE LENGTH=340 52 5e-07
AT2G28340.1 | chr2:12103672-12106172 FORWARD LENGTH=292 52 7e-07
AT3G51080.1 | chr3:18973639-18974668 FORWARD LENGTH=313 52 9e-07
AT4G36240.1 | chr4:17147376-17148211 REVERSE LENGTH=239 52 1e-06
AT3G24050.1 | chr3:8686060-8687462 FORWARD LENGTH=275 50 2e-06
AT1G08010.1 | chr1:2486202-2487402 REVERSE LENGTH=304 50 3e-06
AT1G51600.1 | chr1:19133176-19135252 FORWARD LENGTH=303 49 4e-06
AT3G21175.1 | chr3:7422832-7424598 FORWARD LENGTH=298 49 6e-06
AT3G54810.2 | chr3:20296957-20298236 FORWARD LENGTH=323 48 9e-06
>AT5G47140.1 | chr5:19145108-19147303 FORWARD LENGTH=471
Length = 470
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 121/216 (56%), Gaps = 26/216 (12%)
Query: 1 MGKQGPCRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTPMHAR---DDIDAE 57
MGKQGPC HCGVTSTPLWRNGPP+KPVLCNACGSRWRTKGSL NYTP+HAR D+ + E
Sbjct: 1 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTPLHARAEGDETEIE 60
Query: 58 EPRASXXXXXXXXXXXXXXXXXNPSH----ITMENGPFSDQNFRKMGDPDLXXXXXXXXX 113
+ R + P + N F RK D +
Sbjct: 61 DHR-TQTVMIKGMSLNKKIPKRKPYQENFTVKRANLEFHTGFKRKALDEEASNRSSSGSV 119
Query: 114 XXXXXXCAPYGTADASEMTASAQSHAWESLVPSKRRSCVTRPK-PSQMEKLAKDLNSIMH 172
C AQS+AW+S P KRR+CV RPK S +EKL KDL +I+
Sbjct: 120 VSNSESC--------------AQSNAWDSTFPCKRRTCVGRPKAASSVEKLTKDLYTILQ 165
Query: 173 EEQLLYLSGSSEEDLIYHSATPVDSFEMGYGSMLLR 208
E+Q LSG+SEEDL++ + TP+ +G+GS+L+R
Sbjct: 166 EQQSSCLSGTSEEDLLFENETPM---LLGHGSVLMR 198
>AT4G17570.2 | chr4:9784329-9786644 REVERSE LENGTH=527
Length = 526
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 151/300 (50%), Gaps = 22/300 (7%)
Query: 8 RHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTPMHARDDIDAEEPR------A 61
R+C TPLWRNGPP+KPVLCNACGSRWRTKG+L NYTP+HAR D D +
Sbjct: 23 RNC---YTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHARADGDENDDHHRFQRMK 79
Query: 62 SXXXXXXXXXXXXXXXXXNPSHITMENGPFSDQNFRKMG--DPDLXXXXXXXXXXXXXXX 119
S +I ++ F K + D
Sbjct: 80 SISLGNKNKEIKMLKRKAIQENIIIKRPVFEFSYGLKAAVIEEDASNRSSSGSAVSNSES 139
Query: 120 CAPYGTADASEMTASAQSHAWESLVPSKRRSCVTRPKPSQMEKLAKDLNSIMHEEQLLYL 179
CA + +AD SE+T +QS+AW++ VP KRR+CV RPK S +EKL KDL +I+ E+Q L
Sbjct: 140 CAQFSSADGSELTGPSQSNAWDTTVPCKRRTCVGRPKSSSVEKLTKDLYNILQEQQSSCL 199
Query: 180 SGSSEEDLIYHSATPVDSFEMGYGSMLLRP--NXXXXXXXXXXXXIPADNKSYITSESYS 237
S SSEEDL++ + + S E+G+GS+L++ + +NKS I S++YS
Sbjct: 200 SVSSEEDLLFENEMSMVSVEIGHGSVLMKNPHSFAREEESEASSLSSIENKSSI-SDAYS 258
Query: 238 GSVSFVYSESKATSNQNVITEQPKKFLVQTSDNARRANLHTENQDTLENANSPLVSLHME 297
SV V + S T + ++F +R TE L + SPL S+ ++
Sbjct: 259 HSVKRVEIGAVRGSYYGGQTIKQEQF--------KRTKSQTERVHVLGSHGSPLCSIDLK 310
>AT3G45170.1 | chr3:16537538-16538232 FORWARD LENGTH=205
Length = 204
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 26/46 (56%)
Query: 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTPMHARD 52
C HCG TPLWR GP LCNACG R+RT L Y P + D
Sbjct: 117 CSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGRLLPEYRPASSPD 162
>AT5G66320.1 | chr5:26496208-26497309 REVERSE LENGTH=340
Length = 339
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 4 QGPCRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTP 47
Q C HCGV TP WR GP LCNACG R+++ L Y P
Sbjct: 248 QRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRP 291
>AT2G28340.1 | chr2:12103672-12106172 FORWARD LENGTH=292
Length = 291
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTP 47
C HC T+TP WR GP + LCNACG R+R+ + Y P
Sbjct: 193 CTHCETTTTPQWREGPNGRKTLCNACGIRFRSGRLVLEYRP 233
>AT3G51080.1 | chr3:18973639-18974668 FORWARD LENGTH=313
Length = 312
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTP 47
C HCGV TP WR GP LCNACG R+++ L Y P
Sbjct: 223 CGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRP 263
>AT4G36240.1 | chr4:17147376-17148211 REVERSE LENGTH=239
Length = 238
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTP 47
C HCGV TP WR GP LCNACG R+++ L Y P
Sbjct: 166 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRP 206
>AT3G24050.1 | chr3:8686060-8687462 FORWARD LENGTH=275
Length = 274
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 1 MGKQGPCRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTP 47
MG++ C+HCG TP WR GP LCNACG R+++ + Y P
Sbjct: 192 MGRK--CQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRP 236
>AT1G08010.1 | chr1:2486202-2487402 REVERSE LENGTH=304
Length = 303
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTP 47
C HC T TP WR GP LCNACG R+R+ + Y P
Sbjct: 222 CTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRP 262
>AT1G51600.1 | chr1:19133176-19135252 FORWARD LENGTH=303
Length = 302
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 7 CRHCGV--TSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYT 46
CRHCG+ STP+ R GP LCNACG W KG+ + +
Sbjct: 223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLS 264
>AT3G21175.1 | chr3:7422832-7424598 FORWARD LENGTH=298
Length = 297
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 7 CRHCGVT--STPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTPM 48
CRHCG + STP+ R GP LCNACG W KG+L + + +
Sbjct: 219 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKV 262
>AT3G54810.2 | chr3:20296957-20298236 FORWARD LENGTH=323
Length = 322
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTNYTP 47
C HC VT TP WR GP LCNACG R+++ Y P
Sbjct: 231 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRP 271
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.126 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,489,814
Number of extensions: 375575
Number of successful extensions: 749
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 18
Length of query: 450
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 348
Effective length of database: 8,310,137
Effective search space: 2891927676
Effective search space used: 2891927676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)