FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0512300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Arp2/3 complex, 34kDa subunit p34-Arc family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.48 (0.071) R2 : 0.299
β1 : -3.35 (0.283) R2dD : 0.281 R2D : 0.122
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.49 (0.344) R2dE : 0.0891 R2E : 0.029
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.36 (1.3) R2dD*E : 0.0616 R2D*E : -0.0762
γ1 : -0.973 (0.158) R2dN8 : 0.0881 R2N8 : -0.0245
σ : 1.31
deviance : 796.77
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 7.849
memory length : 1256
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 14.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
793.84 1.32 4.52 -3.32 0.158 -2.32 -2 6.7 -1.06 15.1 11.64 1351 12.3 --
833.43 1.34 4.47 -2.76 0.15 -2.36 2.6 -- -0.834 5.41 11.04 1236 13.7 --
792.44 1.31 4.46 -3.29 0.352 -2.77 -- 6.43 -0.981 8.28 8.08 1256 13.5 --
849.98 1.36 4.48 -2.8 0.532 -2.75 -- -- -0.884 8.06 6.829 1242 13.2 --
796.77 1.31 4.48 -3.35 -- -2.49 -- 7.36 -0.973 -- 7.849 1256 14.3 --
899.33 1.41 4.43 -2.69 0.405 -- -3.2 -- -0.588 16.9 -- -- -- --
925.67 1.42 4.44 -2.7 0.389 -- -- -- -0.605 17.3 -- -- -- --
855 1.36 4.49 -2.98 -- -2.56 -- -- -0.935 -- 3.67 1256 15.4 --
1043 1.5 4.42 -- 0.657 -2.81 -- -- -0.61 7.92 9.932 1249 12.9 --
933.58 1.43 4.44 -2.72 -- -- -- -- -0.614 -- -- -- -- --
1118.47 1.56 4.37 -- 0.436 -- -- -- -0.303 17 -- -- -- --
1052.05 1.51 4.41 -- -- -2.3 -- -- -0.559 -- 10 1264 13.5 --
1128.47 1.57 4.37 -- -- -- -- -- -0.313 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 796.64 radiation 10 1440 > th dose independent rect. 11 7
16 800.39 radiation 10 1440 > th dose independent rect. 11 1
30 800.95 radiation 10 1440 < th dose dependent rect. 11 7
32 801.55 radiation 10 1440 < th dose dependent rect. 11 16
34 801.57 radiation 10 1440 < th dose dependent rect. 11 14
37 801.74 radiation 10 1440 < th dose dependent rect. 11 11
40 801.79 radiation 10 1440 > th dose independent sin 18 NA
43 801.88 humidity 80 1440 > th dose independent rect. 6 9
46 802.07 humidity 80 1440 < th dose independent rect. 6 9
63 802.98 humidity 80 1440 > th dose independent rect. 2 13
73 803.55 humidity 80 1440 < th dose independent rect. 2 13
86 804.14 radiation 10 1440 < th dose dependent sin 18 NA
187 807.29 radiation 10 1440 > th dose independent rect. 11 3
189 807.36 humidity 80 1440 < th dose independent sin 3 NA
209 808.04 humidity 80 1440 > th dose independent sin 3 NA
232 809.43 radiation 10 1440 < th dose dependent rect. 15 2
274 810.94 humidity 70 1440 > th dose dependent rect. 11 2
279 811.05 humidity 60 1440 > th dose dependent rect. 2 14
291 811.36 radiation 10 1440 < th dose independent rect. 15 1
409 814.29 radiation 10 1440 > th dose independent rect. 15 23
464 815.24 radiation 10 1440 > th dose independent no NA NA
557 815.84 humidity 80 1440 > th dose independent rect. 11 3
572 816.14 humidity 60 1440 > th dose dependent sin 3 NA
695 818.18 humidity 90 1440 < th dose dependent rect. 2 15
751 819.40 radiation 10 1440 > th dose independent rect. 13 23
826 820.38 humidity 80 1440 < th dose dependent rect. 16 1
844 820.63 humidity 80 1440 < th dose dependent rect. 15 3
846 820.67 humidity 90 1440 < th dose dependent rect. 11 6
875 821.08 humidity 80 1440 < th dose dependent rect. 13 5
883 821.22 humidity 80 1440 < th dose dependent rect. 11 8
888 821.28 humidity 90 1440 < th dose dependent sin 1 NA
968 821.93 humidity 80 1440 < th dose dependent rect. 11 22