BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0512300 Os04g0512300|AK071791
         (368 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0512300  Arp2/3 complex, 34kDa subunit p34-Arc family p...   699   0.0  

>Os04g0512300 Arp2/3 complex, 34kDa subunit p34-Arc family protein
          Length = 368

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/368 (92%), Positives = 342/368 (92%)

Query: 1   MAFFSSGSRALVEILTGLQSVERPMPVDHTLFEFGSIRYHLQASITDSENIYLSISTPSL 60
           MAFFSSGSRALVEILTGLQSVERPMPVDHTLFEFGSIRYHLQASITDSENIYLSISTPSL
Sbjct: 1   MAFFSSGSRALVEILTGLQSVERPMPVDHTLFEFGSIRYHLQASITDSENIYLSISTPSL 60

Query: 61  SYEASPSSGLPEITLQETRKMYHKFAEIIEPAKEGYTLTLRLNFSGLTRPKDRTKAXXXX 120
           SYEASPSSGLPEITLQETRKMYHKFAEIIEPAKEGYTLTLRLNFSGLTRPKDRTKA    
Sbjct: 61  SYEASPSSGLPEITLQETRKMYHKFAEIIEPAKEGYTLTLRLNFSGLTRPKDRTKAINQI 120

Query: 121 XXXXXXXXXXXXKDMLASLGSSGTMKLVYNQRDPFFVSKTPVKISAIFPMRFRDDTDLAI 180
                       KDMLASLGSSGTMKLVYNQRDPFFVSKTPVKISAIFPMRFRDDTDLAI
Sbjct: 121 SLLQSVILSSQLKDMLASLGSSGTMKLVYNQRDPFFVSKTPVKISAIFPMRFRDDTDLAI 180

Query: 181 ASSFFQELQDLGSTSSFSRAPRCSWSPIPPPELRGEYVHHLTTNGGFVSFDILARHVKGR 240
           ASSFFQELQDLGSTSSFSRAPRCSWSPIPPPELRGEYVHHLTTNGGFVSFDILARHVKGR
Sbjct: 181 ASSFFQELQDLGSTSSFSRAPRCSWSPIPPPELRGEYVHHLTTNGGFVSFDILARHVKGR 240

Query: 241 RAARTAWILLNFQSYVKYHIKCTRSYIQSRMRKRLEIMTEVIDDAKFRGNDESSKKLQVR 300
           RAARTAWILLNFQSYVKYHIKCTRSYIQSRMRKRLEIMTEVIDDAKFRGNDESSKKLQVR
Sbjct: 241 RAARTAWILLNFQSYVKYHIKCTRSYIQSRMRKRLEIMTEVIDDAKFRGNDESSKKLQVR 300

Query: 301 KRSKRRSIKFARAKKLQKGFKAVIDXXXXXXXXXXVKGLDRFRRHCQCFPVLKLTMAQRK 360
           KRSKRRSIKFARAKKLQKGFKAVID          VKGLDRFRRHCQCFPVLKLTMAQRK
Sbjct: 301 KRSKRRSIKFARAKKLQKGFKAVIDKIKRLRLRIRVKGLDRFRRHCQCFPVLKLTMAQRK 360

Query: 361 EQKYQKLE 368
           EQKYQKLE
Sbjct: 361 EQKYQKLE 368



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,127,759
Number of extensions: 443171
Number of successful extensions: 993
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 992
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 266
Effective length of database: 11,709,973
Effective search space: 3114852818
Effective search space used: 3114852818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)