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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0510900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Embryo-specific protein 1 (ATS1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0313) R2 : 0.204
β1 : 0.359 (0.109) R2dD : 0.0213 R2D : -0.0209
β2 : -- (--) R2dC : -- R2C : --
β3 : 20.8 (3.02) R2dE : 3.93 R2E : -2.63
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 46.5 (8.07) R2dD*E : 2.74 R2D*E : -3.69
γ1 : 0.276 (0.0611) R2dN8 : 0.048 R2N8 : 0.0129
σ : 0.535
deviance : 131.76
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.551
memory length : 133
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.1
open length of G : 1.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.24 0.538 2.89 0.343 0.0249 20.4 0.499 45.3 0.278 7.59 1.458 108 4.08 1
329.66 0.846 2.84 1.45 0.508 14.7 2.79 -- 0.47 6.02 1.837 172 4.15 0.97
131.74 0.535 2.89 0.353 0.0479 20.6 -- 46.1 0.276 4.49 2.368 134 4.07 1.07
273.19 0.77 2.95 1.7 0.401 10.9 -- -- 0.622 11.2 2.402 193 4.1 0.745
131.76 0.535 2.9 0.359 -- 20.8 -- 46.5 0.276 -- 2.551 133 4.1 1.08
160.07 0.593 2.83 0.082 0.0961 -- -0.156 -- 0.248 4.29 -- -- -- --
160.1 0.593 2.83 0.0837 0.0997 -- -- -- 0.249 5.18 -- -- -- --
198.48 0.656 2.82 0.998 -- 9.56 -- -- 0.665 -- 4.094 174 4.33 0.815
165.47 0.599 2.79 -- 0.1 8.41 -- -- 0.0939 9.87 3.089 191 3.87 0.908
160.62 0.592 2.83 0.0872 -- -- -- -- 0.251 -- -- -- -- --
160.29 0.592 2.83 -- 0.101 -- -- -- 0.239 5.15 -- -- -- --
138.21 0.548 2.83 -- -- 4.26 -- -- 0.259 -- 6.57 120 3.68 1.16
160.82 0.592 2.83 -- -- -- -- -- 0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 131.99 radiation 1.0 90 > th dose independent rect. 4 1
11 131.99 radiation 1.0 90 > th dose dependent rect. 4 1
21 138.20 wind 1.0 10 < th dose dependent rect. 6 1
22 141.53 radiation 1.0 10 < th dose dependent rect. 6 1
56 148.51 wind 1.0 10 < th dose independent rect. 5 4
63 149.85 wind 1.0 90 < th dose independent rect. 5 1
65 150.17 humidity 90.0 10 < th dose independent rect. 5 1
67 151.09 temperature 20.0 90 < th dose independent rect. 4 1
76 152.41 temperature 20.0 30 > th dose independent rect. 5 1
80 152.52 radiation 1.0 10 < th dose independent rect. 6 1
89 152.89 wind 1.0 10 < th dose dependent rect. 4 14
93 152.90 wind 1.0 10 < th dose dependent rect. 4 12
104 153.00 precipitation 0.1 720 > th dose independent rect. 9 4
105 153.00 precipitation 0.1 720 > th dose dependent rect. 9 4
106 153.01 humidity 90.0 720 > th dose independent rect. 10 1
107 153.01 atmosphere 1005.0 30 > th dose independent rect. 5 1
108 153.01 precipitation 0.1 720 > th dose independent rect. 9 2
110 153.01 precipitation 0.1 720 > th dose dependent rect. 9 2
125 153.05 humidity 90.0 270 > th dose dependent rect. 10 1
138 153.18 atmosphere 1005.0 90 < th dose independent rect. 4 1
155 153.30 wind 1.0 90 < th dose dependent rect. 11 1
158 153.53 wind 1.0 10 < th dose dependent rect. 11 1
190 153.85 wind 1.0 90 < th dose independent rect. 11 1
200 153.92 atmosphere 1010.0 1440 < th dose independent rect. 12 1
202 153.97 atmosphere 1010.0 1440 > th dose independent rect. 12 1
214 154.19 atmosphere 1015.0 30 < th dose independent rect. 21 23
225 154.50 wind 1.0 10 < th dose independent rect. 11 1
227 154.50 temperature 25.0 720 < th dose dependent rect. 10 1
234 154.68 wind 1.0 10 < th dose dependent sin 3 NA
235 154.71 wind 1.0 10 < th dose dependent rect. 2 7
239 154.77 wind 1.0 10 < th dose dependent rect. 5 21
241 154.79 wind 1.0 10 < th dose dependent rect. 24 9
242 154.80 wind 1.0 10 < th dose dependent rect. 24 7
261 154.96 temperature 25.0 90 < th dose dependent rect. 4 1
262 155.00 wind 1.0 10 > th dose independent rect. 21 23
272 155.13 radiation 40.0 30 > th dose dependent rect. 11 1
285 155.20 wind 9.0 4320 < th dose independent rect. 6 1
288 155.22 wind 1.0 90 < th dose independent rect. 1 6
291 155.27 precipitation 0.1 720 > th dose independent rect. 6 1
292 155.27 precipitation 0.1 720 > th dose dependent rect. 6 1
327 155.37 temperature 10.0 1440 > th dose independent rect. 6 1
330 155.37 temperature 30.0 1440 < th dose independent rect. 6 1
334 155.37 humidity 50.0 1440 > th dose independent rect. 6 1
339 155.37 atmosphere 995.0 1440 > th dose independent rect. 6 1
340 155.37 atmosphere 1015.0 1440 < th dose independent rect. 6 1
341 155.37 radiation 40.0 1440 < th dose independent rect. 6 1
345 155.37 temperature 10.0 1440 > th dose independent rect. 7 23
371 155.40 wind 1.0 90 < th dose independent rect. 1 9
421 155.48 wind 1.0 30 > th dose independent rect. 5 1
427 155.51 atmosphere 1015.0 720 < th dose independent rect. 21 21
432 155.52 atmosphere 1015.0 720 < th dose independent rect. 12 15
434 155.53 atmosphere 1015.0 720 < th dose independent rect. 15 9
435 155.53 radiation 40.0 30 > th dose dependent sin 22 NA
483 155.61 radiation 40.0 30 > th dose dependent no NA NA
726 155.71 atmosphere 1015.0 720 < th dose independent rect. 6 19
792 155.77 wind 3.0 90 < th dose dependent rect. 1 5
801 155.79 atmosphere 1015.0 720 < th dose independent rect. 15 18
807 155.80 atmosphere 1005.0 270 > th dose dependent rect. 17 3
817 155.83 humidity 80.0 720 < th dose independent rect. 23 2
819 155.83 atmosphere 1015.0 720 < th dose independent rect. 21 6
820 155.83 atmosphere 1015.0 720 < th dose independent rect. 13 20
838 155.83 temperature 20.0 30 < th dose dependent rect. 5 21