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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0493400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chitinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.22 (0.0782) R2 : 0.528
β1 : -2.6 (0.288) R2dD : 0.091 R2D : 0.0384
β2 : 0.846 (0.201) R2dC : 0.0174 R2C : -0.0366
β3 : -2.34 (0.18) R2dE : 0.189 R2E : 0.167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.99 (0.17) R2dN8 : 0.201 R2N8 : 0.259
σ : 1.45
deviance : 969.67
__
_____
C
peak time of C : 7.15
E
wheather : temperature
threshold : 24.99
memory length : 1443
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.97
open length of G : 1.14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
955.32 1.45 5.2 -1.4 0.812 -2.04 -0.96 -3.67 2.17 7.35 25 1442 5.97 1.19
968.89 1.45 5.2 -2.52 0.825 -2.33 -0.48 -- 2.03 7.32 25 1443 5.95 1.14
957.36 1.44 5.2 -1.44 0.813 -2.08 -- -3.65 2.17 7.52 25 1443 5.96 1.22
969.67 1.45 5.22 -2.6 0.846 -2.34 -- -- 1.99 7.15 24.99 1443 5.97 1.14
992.47 1.47 5.21 -1.46 -- -2.07 -- -3.58 2.2 -- 25 1442 5.96 1.16
1332 1.71 5.19 -1.99 0.916 -- -0.995 -- 2.42 6.62 -- -- -- --
1334.5 1.71 5.19 -2.01 0.913 -- -- -- 2.42 6.59 -- -- -- --
1000.33 1.47 5.33 -2.64 -- -2.29 -- -- 1.9 -- 24.99 1437 5.97 1.15
1146.47 1.58 5.22 -- 0.781 -2.09 -- -- 2.25 7.28 24.98 1443 5.97 1.14
1377.92 1.73 5.2 -1.98 -- -- -- -- 2.44 -- -- -- -- --
1440.56 1.78 5.13 -- 0.888 -- -- -- 2.65 6.72 -- -- -- --
1178.42 1.6 5.24 -- -- -2.01 -- -- 2.28 -- 24.98 1438 5.96 1.09
1481.76 1.8 5.15 -- -- -- -- -- 2.66 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 910.11 wind 1 43200 > th dose dependent rect. 9 1
2 910.36 wind 5 43200 < th dose dependent rect. 9 1
3 911.72 wind 9 43200 < th dose dependent rect. 9 1
5 913.53 atmosphere 1000 43200 < th dose dependent rect. 12 3
16 916.19 atmosphere 1000 43200 < th dose dependent rect. 9 7
55 923.20 wind 1 43200 < th dose dependent rect. 1 1
74 927.32 atmosphere 995 43200 > th dose independent rect. 3 15
76 927.84 atmosphere 995 43200 > th dose independent rect. 3 18
77 927.94 atmosphere 995 43200 > th dose independent rect. 4 12
85 928.64 atmosphere 1000 43200 < th dose dependent rect. 9 1
87 929.04 atmosphere 995 43200 < th dose independent rect. 3 15
88 929.12 wind 5 43200 > th dose independent rect. 6 1
101 930.45 atmosphere 995 43200 > th dose independent sin 19 NA
104 930.62 atmosphere 995 43200 > th dose independent sin 1 NA
109 930.81 atmosphere 995 43200 < th dose independent sin 19 NA
116 931.35 atmosphere 995 43200 > th dose independent rect. 12 11
119 931.40 wind 3 43200 > th dose dependent rect. 6 1
120 931.41 atmosphere 995 43200 < th dose independent rect. 12 11
123 931.63 wind 5 43200 < th dose independent rect. 6 1
126 931.87 atmosphere 1000 43200 < th dose dependent sin 23 NA
128 932.27 wind 9 43200 < th dose independent rect. 20 18
132 932.84 radiation 30 14400 > th dose independent rect. 16 16
134 933.12 atmosphere 1000 43200 < th dose independent rect. 14 1
136 933.19 atmosphere 995 43200 < th dose independent sin 1 NA
144 933.46 atmosphere 995 43200 > th dose independent rect. 8 16
157 934.46 wind 3 43200 > th dose dependent rect. 2 14
159 934.53 wind 3 43200 > th dose dependent rect. 24 16
175 934.99 atmosphere 995 43200 < th dose independent rect. 9 15
181 935.10 atmosphere 1000 43200 < th dose independent rect. 6 1
185 935.16 atmosphere 1000 43200 > th dose independent rect. 7 1
188 935.25 atmosphere 1000 43200 > th dose independent rect. 6 9
189 935.30 wind 1 43200 > th dose dependent rect. 6 4
190 935.38 atmosphere 1000 43200 < th dose independent rect. 6 9
204 935.78 atmosphere 1000 43200 > th dose independent rect. 13 2
211 936.01 wind 1 43200 < th dose independent rect. 1 1
218 936.31 wind 3 43200 > th dose dependent rect. 20 20
219 936.46 atmosphere 1000 43200 > th dose independent rect. 6 6
220 936.50 atmosphere 1000 43200 < th dose independent rect. 6 6
254 937.17 atmosphere 1000 43200 > th dose independent rect. 11 4
259 937.34 atmosphere 1000 43200 < th dose independent rect. 11 4
268 937.49 wind 9 43200 > th dose dependent rect. 20 10
301 938.53 wind 9 43200 < th dose dependent rect. 6 4
304 938.58 wind 9 43200 > th dose independent rect. 20 18
310 938.74 wind 7 43200 > th dose dependent rect. 20 19
319 939.30 atmosphere 995 43200 < th dose dependent rect. 13 10
323 939.43 atmosphere 1000 43200 > th dose independent rect. 11 1
329 939.49 atmosphere 1000 43200 < th dose independent rect. 11 1
346 939.84 wind 3 43200 > th dose dependent sin 3 NA
387 941.64 wind 3 43200 > th dose independent rect. 2 2
406 942.48 wind 9 43200 > th dose independent rect. 20 11
415 942.80 wind 3 43200 > th dose independent rect. 2 9
416 942.96 radiation 10 14400 < th dose dependent rect. 18 1
442 943.67 radiation 20 14400 < th dose dependent rect. 18 11
446 943.77 wind 1 43200 > th dose independent rect. 8 2
455 944.05 radiation 10 14400 < th dose dependent rect. 18 5
498 945.81 wind 3 43200 < th dose independent rect. 2 8
522 946.84 wind 5 43200 < th dose independent rect. 24 17
528 947.03 wind 3 43200 < th dose independent rect. 7 3
546 947.66 wind 5 43200 > th dose independent rect. 1 16
568 948.08 wind 3 43200 > th dose independent rect. 6 5
570 948.09 humidity 80 43200 > th dose independent rect. 22 1
573 948.14 atmosphere 995 43200 < th dose dependent rect. 15 7
578 948.27 wind 5 43200 < th dose independent rect. 19 22
606 949.35 wind 9 43200 < th dose dependent rect. 2 13
633 950.39 wind 9 43200 < th dose independent rect. 20 11
634 950.50 wind 5 43200 > th dose independent rect. 19 22
651 950.97 radiation 30 14400 > th dose independent rect. 7 1
681 951.65 wind 9 43200 > th dose independent rect. 17 21
682 951.67 radiation 40 14400 > th dose dependent rect. 15 17
689 952.09 humidity 80 43200 < th dose independent rect. 22 1
728 953.54 wind 3 43200 > th dose dependent rect. 16 20
735 953.80 temperature 25 14400 > th dose dependent rect. 4 1
745 954.05 radiation 30 14400 < th dose independent rect. 16 12
797 955.29 wind 7 43200 > th dose dependent rect. 8 6
831 956.23 radiation 30 14400 < th dose independent rect. 16 1
841 956.39 wind 9 43200 < th dose dependent sin 4 NA
843 956.47 wind 5 43200 > th dose independent rect. 14 22
849 956.56 wind 7 43200 > th dose dependent rect. 6 8
856 956.63 radiation 30 14400 < th dose independent rect. 16 4
909 957.74 wind 3 43200 > th dose dependent sin 11 NA
913 957.79 wind 5 43200 < th dose independent rect. 14 22
918 957.90 wind 3 43200 > th dose dependent rect. 18 14
925 958.00 radiation 30 14400 < th dose independent rect. 16 7
941 958.56 wind 3 43200 > th dose dependent rect. 18 16
970 959.13 radiation 10 14400 > th dose dependent rect. 17 13
980 959.36 wind 5 43200 < th dose independent sin 3 NA
995 959.54 temperature 25 1440 < th dose independent rect. 6 1