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Os04g0486600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 (EC 1.2.1.12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.0172) R2 : 0.522
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.898 (0.0409) R2dC : 0.506 R2C : 0.497
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.154 (0.0362) R2dN8 : 0.0246 R2N8 : 0.0156
σ : 0.324
deviance : 48.03
__
_____
C
peak time of C : 11.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.95 0.282 13.8 -0.623 0.957 0.386 0.568 -0.699 -0.0119 11.7 20.56 852 -- --
36.73 0.282 13.8 -0.763 0.893 0.727 0.727 -- -0.0463 11.9 18.4 6839 -- --
37.25 0.284 13.8 -0.624 0.97 0.398 -- -0.807 -0.0196 11.6 20.6 851 -- --
38.58 0.289 13.8 -0.922 0.903 0.766 -- -- -0.057 11.7 16.3 25455 -- --
85.16 0.432 13.8 -0.424 -- 0.487 -- 0.074 0.0227 -- 20.6 851 -- --
43.04 0.308 13.8 -0.324 0.897 -- 0.796 -- 0.119 11.7 -- -- -- --
45.77 0.317 13.8 -0.293 0.895 -- -- -- 0.122 11.6 -- -- -- --
85.19 0.432 13.8 -0.438 -- 0.484 -- -- 0.0197 -- 20.6 851 -- --
46.7 0.32 13.8 -- 0.901 0.519 -- -- 0.147 11.7 16.3 25455 -- --
96.08 0.458 13.8 -0.318 -- -- -- -- 0.111 -- -- -- -- --
48.03 0.324 13.8 -- 0.898 -- -- -- 0.154 11.7 -- -- -- --
80.22 0.419 13.8 -- -- 0.464 -- -- 0.0837 -- 27.5 47098 -- --
98.74 0.464 13.8 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.76 temperature 20 30 > th dose dependent sin 4 NA
11 33.95 temperature 15 30 > th dose dependent rect. 19 23
13 34.06 temperature 20 720 > th dose independent rect. 4 3
14 34.07 temperature 20 720 > th dose independent rect. 23 8
22 34.22 temperature 30 90 < th dose dependent rect. 3 16
26 34.24 temperature 20 720 > th dose independent sin 8 NA
27 34.24 radiation 10 4320 < th dose dependent rect. 3 2
29 34.25 temperature 20 720 > th dose independent rect. 21 14
36 34.30 radiation 30 43200 < th dose independent rect. 3 4
43 34.33 temperature 15 720 > th dose dependent rect. 19 16
49 34.37 radiation 30 43200 < th dose independent rect. 1 6
62 34.50 radiation 30 43200 < th dose independent rect. 18 13
65 34.52 temperature 15 720 > th dose dependent sin 8 NA
74 34.55 temperature 30 10 < th dose dependent rect. 3 17
97 34.72 temperature 30 90 < th dose dependent rect. 3 14
104 34.74 temperature 30 30 < th dose dependent sin 2 NA
113 34.77 humidity 90 14400 > th dose dependent rect. 23 12
117 34.78 radiation 40 43200 < th dose dependent rect. 3 2
123 34.79 humidity 90 14400 > th dose dependent rect. 1 9
149 34.84 radiation 30 4320 < th dose independent rect. 16 15
159 34.86 humidity 90 14400 > th dose dependent sin 8 NA
167 34.88 radiation 10 4320 < th dose independent rect. 3 3
176 34.89 radiation 20 43200 > th dose dependent rect. 6 1
204 34.93 radiation 10 4320 < th dose independent rect. 1 5
208 34.94 wind 7 43200 > th dose independent rect. 22 1
209 34.94 wind 9 43200 < th dose independent rect. 19 1
225 34.97 wind 7 43200 > th dose dependent rect. 22 1
227 34.97 temperature 15 720 > th dose dependent rect. 23 10
239 34.99 wind 7 43200 < th dose independent rect. 22 1
243 34.99 temperature 15 720 > th dose dependent rect. 4 3
248 35.00 humidity 90 14400 > th dose independent rect. 23 10
282 35.06 humidity 90 14400 > th dose dependent rect. 18 10
285 35.07 humidity 90 14400 > th dose independent rect. 1 8
301 35.09 temperature 20 720 < th dose independent rect. 23 16
306 35.10 radiation 10 4320 < th dose independent rect. 19 11
331 35.13 humidity 60 43200 > th dose independent rect. 8 3
332 35.13 radiation 40 43200 < th dose dependent rect. 1 4
333 35.13 humidity 90 14400 > th dose dependent rect. 21 6
351 35.15 radiation 1 14400 < th dose dependent rect. 6 1
391 35.20 temperature 20 720 < th dose independent sin 6 NA
434 35.24 humidity 60 43200 < th dose independent rect. 8 3
451 35.25 radiation 10 4320 < th dose dependent rect. 1 4
470 35.26 radiation 1 14400 < th dose dependent rect. 4 4
474 35.26 radiation 1 14400 < th dose dependent rect. 19 13
478 35.27 temperature 20 4320 > th dose independent rect. 21 1
480 35.27 temperature 20 4320 < th dose independent rect. 21 2
495 35.28 radiation 1 14400 > th dose independent rect. 18 1
542 35.31 radiation 1 14400 < th dose independent rect. 18 4
543 35.31 wind 7 43200 > th dose independent rect. 21 9
547 35.31 wind 7 43200 > th dose dependent rect. 21 4
548 35.31 temperature 15 720 > th dose dependent rect. 1 7
554 35.32 radiation 1 14400 < th dose independent rect. 18 2
557 35.32 radiation 1 14400 < th dose independent rect. 18 6
566 35.32 radiation 1 14400 < th dose dependent rect. 18 17
569 35.33 humidity 90 14400 > th dose independent sin 9 NA
572 35.33 temperature 20 4320 < th dose independent rect. 19 4
577 35.33 wind 7 43200 < th dose independent rect. 21 9
591 35.33 temperature 20 10 > th dose dependent rect. 6 12
603 35.34 radiation 1 14400 < th dose independent rect. 18 8
613 35.35 wind 7 43200 > th dose independent rect. 5 1
614 35.35 humidity 60 43200 < th dose independent rect. 9 1
624 35.35 wind 9 43200 > th dose dependent rect. 5 1
629 35.36 wind 9 43200 > th dose independent rect. 19 1
630 35.36 radiation 1 4320 > th dose independent rect. 4 1
648 35.36 radiation 1 4320 > th dose dependent rect. 4 1
668 35.37 humidity 50 43200 < th dose independent rect. 16 1
673 35.37 humidity 90 14400 > th dose independent rect. 18 12
687 35.38 temperature 20 4320 > th dose independent rect. 19 4
690 35.38 wind 7 43200 < th dose independent rect. 22 6
708 35.39 humidity 60 43200 < th dose independent rect. 18 5
730 35.40 radiation 10 43200 < th dose independent rect. 20 10
735 35.40 radiation 1 14400 < th dose independent rect. 18 14
739 35.40 radiation 1 14400 < th dose dependent sin 9 NA
742 35.40 wind 7 43200 > th dose dependent rect. 21 8
743 35.40 temperature 15 270 > th dose dependent rect. 3 11
761 35.41 wind 9 43200 > th dose dependent rect. 19 1
785 35.42 wind 9 43200 > th dose dependent rect. 24 2
815 35.43 humidity 70 43200 < th dose dependent rect. 9 1
819 35.44 wind 7 43200 < th dose independent rect. 5 1
837 35.45 radiation 1 14400 > th dose independent rect. 7 1
846 35.45 humidity 50 43200 > th dose independent rect. 16 9
847 35.45 humidity 50 43200 > th dose independent rect. 16 11
870 35.46 humidity 50 43200 > th dose independent rect. 16 7
877 35.46 humidity 50 43200 > th dose independent rect. 16 18
889 35.47 radiation 1 14400 < th dose independent rect. 7 1
896 35.47 humidity 70 43200 < th dose dependent rect. 19 1
898 35.47 humidity 70 43200 < th dose dependent rect. 8 3
913 35.48 humidity 50 43200 > th dose independent rect. 17 16
926 35.49 humidity 50 43200 > th dose independent rect. 13 4
927 35.49 humidity 50 43200 < th dose independent rect. 13 4
942 35.49 humidity 60 43200 < th dose dependent rect. 18 5
950 35.50 wind 7 43200 < th dose independent rect. 1 1
951 35.50 temperature 20 43200 > th dose independent rect. 7 1
959 35.50 humidity 50 43200 < th dose independent rect. 16 19
972 35.51 humidity 70 43200 > th dose independent rect. 19 2
994 35.52 temperature 20 43200 < th dose independent rect. 7 1
995 35.52 humidity 70 43200 < th dose independent rect. 19 1
996 35.52 humidity 50 43200 < th dose independent rect. 13 2
998 35.52 temperature 20 720 < th dose independent rect. 3 3