Os04g0467400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Poly(A)-specific ribonuclease PARN (EC 3.1.13.4) (Polyadenylate- specific ribonuclease) (AtPARN).
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Os04g0467400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Poly(A)-specific ribonuclease PARN (EC 3.1.13.4) (Polyadenylate- specific ribonuclease) (AtPARN).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.15 | 0.211 | 10.4 | 1.1 | 0.0571 | -0.424 | 0.05 | 2.87 | 0.109 | 6.63 | 25.3 | 1397 | -- | -- |
| 20.76 | 0.214 | 10.5 | 0.366 | 0.164 | -0.493 | 0.0281 | -- | -0.0216 | 12.9 | 17.88 | 987 | -- | -- |
| 20.15 | 0.209 | 10.4 | 1.1 | 0.0556 | -0.426 | -- | 2.89 | 0.105 | 6.34 | 25.4 | 1380 | -- | -- |
| 20.76 | 0.214 | 10.5 | 0.373 | 0.16 | -0.576 | -- | -- | -0.0215 | 12.8 | 13.35 | 791 | -- | -- |
| 20.32 | 0.21 | 10.4 | 1.11 | -- | -0.425 | -- | 2.96 | 0.0966 | -- | 25.78 | 1404 | -- | -- |
| 23.97 | 0.23 | 10.5 | 0.26 | 0.0616 | -- | 0.0411 | -- | -0.103 | 7.17 | -- | -- | -- | -- |
| 23.98 | 0.229 | 10.5 | 0.261 | 0.0616 | -- | -- | -- | -0.103 | 7.28 | -- | -- | -- | -- |
| 21.47 | 0.216 | 10.5 | 0.37 | -- | -0.413 | -- | -- | -0.0372 | -- | 13.75 | 797 | -- | -- |
| 23.92 | 0.229 | 10.5 | -- | 0.118 | -0.336 | -- | -- | -0.0827 | 12.3 | 20.5 | 39 | -- | -- |
| 24.18 | 0.23 | 10.5 | 0.262 | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
| 25.77 | 0.237 | 10.5 | -- | 0.0643 | -- | -- | -- | -0.132 | 7.01 | -- | -- | -- | -- |
| 24.54 | 0.231 | 10.5 | -- | -- | -0.242 | -- | -- | -0.0976 | -- | 20.52 | 48 | -- | -- |
| 25.99 | 0.238 | 10.5 | -- | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.75 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 2 | 18.81 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 5 | 18.83 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 7 | 19.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 8 | 19.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 9 | 19.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 13 | 19.05 | wind | 5.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 14 | 19.05 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 18 | 19.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 33 | 19.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 34 | 19.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 36 | 19.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 41 | 19.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 43 | 19.32 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 65 | 19.41 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 76 | 19.48 | wind | 5.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 88 | 19.54 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 101 | 19.57 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 105 | 19.59 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 107 | 19.59 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 113 | 19.61 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 120 | 19.63 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 121 | 19.63 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 131 | 19.68 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 141 | 19.69 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 142 | 19.69 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 148 | 19.70 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 157 | 19.72 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 197 | 19.76 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 199 | 19.77 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 200 | 19.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 205 | 19.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 214 | 19.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 223 | 19.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 230 | 19.79 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 235 | 19.80 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 238 | 19.80 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 249 | 19.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 286 | 19.84 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 336 | 19.86 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 347 | 19.86 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 349 | 19.87 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 350 | 19.87 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 363 | 19.87 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 408 | 19.90 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 409 | 19.90 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 411 | 19.90 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 415 | 19.90 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 438 | 19.91 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 449 | 19.92 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 452 | 19.92 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 480 | 19.93 | temperature | 25.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 508 | 19.94 | temperature | 25.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 520 | 19.94 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 544 | 19.95 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 551 | 19.95 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 556 | 19.95 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 2 | NA |
| 575 | 19.96 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 618 | 19.97 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 621 | 19.97 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 657 | 19.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 693 | 19.99 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 704 | 20.00 | temperature | 25.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 723 | 20.00 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 742 | 20.01 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 756 | 20.01 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 827 | 20.03 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 847 | 20.03 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 848 | 20.04 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 877 | 20.05 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 896 | 20.05 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 917 | 20.06 | temperature | 25.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 975 | 20.07 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |