BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0467400 Os04g0467400|AK068773
         (207 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55870.1  | chr1:20895663-20898359 FORWARD LENGTH=690          186   6e-48
AT3G25430.1  | chr3:9221204-9223700 FORWARD LENGTH=619             90   1e-18

>AT1G55870.1 | chr1:20895663-20898359 FORWARD LENGTH=690
          Length = 689

 Score =  186 bits (473), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 84/129 (65%), Positives = 99/129 (76%)

Query: 46  VKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRDSA 105
           +K VTR N    L +LR+ V+ A FV IDLEM+GVTSAPWRD+L  DR DVRYLK++DSA
Sbjct: 38  LKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDSA 97

Query: 106 ERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQ 165
           E+FA +Q GVCPFRWD    +FV++PHNFF+F R E   D   HEFLCQTTS+DFLAKYQ
Sbjct: 98  EKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQ 157

Query: 166 FDFNTCFRE 174
           FDFNTC  E
Sbjct: 158 FDFNTCIHE 166



>AT3G25430.1 | chr3:9221204-9223700 FORWARD LENGTH=619
          Length = 618

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 45  AVKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRDS 104
           +VKQV + N    L+E+R  +  + F+ + L+ +G  +A W     +D     YLK + +
Sbjct: 25  SVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAKYA 84

Query: 105 AERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKY 164
           AER+  LQ  +CPF    +K     HP+NF +F R+E      ++ F CQ + +  +A+ 
Sbjct: 85  AERYQILQFALCPFSLQGSK--LTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMARE 142

Query: 165 QFDFNTCFRE 174
            FDFN C  E
Sbjct: 143 GFDFNICIYE 152



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,360,085
Number of extensions: 128308
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 113
Effective length of database: 8,529,465
Effective search space: 963829545
Effective search space used: 963829545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)