BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0467400 Os04g0467400|AK068773
(207 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0467400 Similar to Poly(A)-specific ribonuclease PARN ... 345 1e-95
Os08g0440200 Ribonuclease CAF1 family protein 91 4e-19
>Os04g0467400 Similar to Poly(A)-specific ribonuclease PARN (EC 3.1.13.4)
(Polyadenylate- specific ribonuclease) (AtPARN)
Length = 207
Score = 345 bits (886), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 44 VAVKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRD 103
VAVKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRD
Sbjct: 44 VAVKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRD 103
Query: 104 SAERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAK 163
SAERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAK
Sbjct: 104 SAERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAK 163
Query: 164 YQFDFNTCFREEHKKKRHFRNYIHCIIMKHLHIQTLPRRKKMRH 207
YQFDFNTCFREEHKKKRHFRNYIHCIIMKHLHIQTLPRRKKMRH
Sbjct: 164 YQFDFNTCFREEHKKKRHFRNYIHCIIMKHLHIQTLPRRKKMRH 207
>Os08g0440200 Ribonuclease CAF1 family protein
Length = 291
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 48 QVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRDSAER 107
QVT+ N AEA+++L A V +V I + +G + WR L +D + YLK + +AE
Sbjct: 15 QVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGAPTG-WRRALPVDTPETAYLKAKLAAES 73
Query: 108 FAALQLGVCPFRWDP-AKSAFVAHPHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQF 166
F L +CPFR D + S VA+P+NF +F R+E + F CQ++ + +A F
Sbjct: 74 FQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGF 133
Query: 167 DFNTCFRE 174
DFN C +
Sbjct: 134 DFNMCIYD 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.138 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,156,109
Number of extensions: 190765
Number of successful extensions: 411
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 153 (63.5 bits)