Os04g0463400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF125, transmembrane family protein.
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Os04g0463400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF125, transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 245.66 | 0.736 | 9.46 | -2.78 | 1.18 | -1.61 | -0.497 | 0.616 | -0.857 | 5.91 | 27.7 | 5945 | -- | -- |
| 246.15 | 0.731 | 9.45 | -2.61 | 1.18 | -1.58 | -0.533 | -- | -0.829 | 5.91 | 27.6 | 5939 | -- | -- |
| 246.25 | 0.731 | 9.46 | -2.77 | 1.18 | -1.61 | -- | 0.597 | -0.852 | 5.96 | 27.71 | 5943 | -- | -- |
| 246.48 | 0.731 | 9.44 | -2.6 | 1.17 | -1.57 | -- | -- | -0.821 | 5.94 | 27.7 | 5943 | -- | -- |
| 310.19 | 0.82 | 9.46 | -2.72 | -- | -1.63 | -- | 0.639 | -0.77 | -- | 27.8 | 5681 | -- | -- |
| 338.68 | 0.863 | 9.37 | -1.96 | 1.17 | -- | -0.375 | -- | -0.483 | 5.87 | -- | -- | -- | -- |
| 339.02 | 0.862 | 9.36 | -1.96 | 1.17 | -- | -- | -- | -0.481 | 5.89 | -- | -- | -- | -- |
| 310.14 | 0.82 | 9.45 | -2.57 | -- | -1.61 | -- | -- | -0.739 | -- | 27.86 | 5681 | -- | -- |
| 398.53 | 0.93 | 9.35 | -- | 1.13 | -0.909 | -- | -- | -0.414 | 6.09 | 28.7 | 6003 | -- | -- |
| 410.04 | 0.946 | 9.38 | -1.93 | -- | -- | -- | -- | -0.454 | -- | -- | -- | -- | -- |
| 440.53 | 0.982 | 9.32 | -- | 1.14 | -- | -- | -- | -0.262 | 5.97 | -- | -- | -- | -- |
| 458.56 | 0.997 | 9.33 | -- | -- | -1.01 | -- | -- | -0.236 | -- | 29.24 | 5620 | -- | -- |
| 508.02 | 1.05 | 9.34 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 232.44 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 7 | 233.78 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 13 | 234.85 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 16 | 235.17 | humidity | 80 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 19 | 235.24 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 13 |
| 22 | 235.41 | humidity | 70 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 23 | 235.46 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 28 | 235.84 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 31 | 235.88 | humidity | 70 | 14400 | > th | dose dependent | rect. | 14 | 6 |
| 32 | 235.91 | humidity | 80 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 33 | 235.91 | humidity | 60 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 103 | 237.05 | humidity | 60 | 14400 | > th | dose dependent | rect. | 11 | 14 |
| 119 | 237.19 | humidity | 80 | 14400 | < th | dose independent | sin | 20 | NA |
| 124 | 237.21 | humidity | 70 | 14400 | > th | dose dependent | sin | 19 | NA |
| 151 | 237.41 | humidity | 70 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 164 | 237.54 | humidity | 80 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 177 | 237.69 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 180 | 237.71 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 201 | 237.91 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 212 | 238.00 | humidity | 80 | 14400 | > th | dose independent | sin | 20 | NA |
| 297 | 238.58 | temperature | 10 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 388 | 239.18 | humidity | 70 | 14400 | > th | dose independent | rect. | 13 | 12 |
| 875 | 241.25 | humidity | 60 | 14400 | > th | dose dependent | rect. | 22 | 22 |
| 886 | 241.29 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 929 | 241.43 | humidity | 60 | 14400 | > th | dose dependent | no | NA | NA |
| 953 | 241.49 | humidity | 90 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 993 | 241.63 | temperature | 10 | 14400 | > th | dose dependent | rect. | 10 | 1 |