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Os04g0459500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GADPH (383 AA) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.2 (0.0223) R2 : 0.752
β1 : -1.27 (0.0819) R2dD : 0.121 R2D : 0.04
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.74 (0.0585) R2dE : 0.491 R2E : 0.491
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.4 (0.256) R2dD*E : 0.102 R2D*E : 0.0572
γ1 : -0.567 (0.0478) R2dN8 : 0.0997 R2N8 : 0.0703
σ : 0.417
deviance : 80.24
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 982.4
memory length : 299
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 8.17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.22 0.405 16.2 -1.23 0.775 -1.4 1.63 -2.58 -0.59 8.23 989.8 300 12.1 5.42
80.66 0.418 16.2 -1.21 0.801 -1.25 2.97 -- -0.574 7.6 988 324 12.1 5.4
79.03 0.414 16.2 -1.16 0.73 -1.36 -- -3.49 -0.578 7.93 988.2 281 12.3 6.12
105.59 0.479 16.2 -1.1 0.726 -1.37 -- -- -0.572 8.23 988.3 301 12 5.97
80.24 0.417 16.2 -1.27 -- -1.74 -- -3.4 -0.567 -- 982.4 299 12 8.17
107.16 0.485 16.2 -1.2 1.59 -- 3.19 -- -0.68 6.95 -- -- -- --
133.51 0.541 16.2 -1.14 1.6 -- -- -- -0.688 6.94 -- -- -- --
111.51 0.492 16.2 -1.11 -- -1.73 -- -- -0.556 -- 978.7 309 11.9 7.8
138.16 0.547 16.2 -- 0.677 -1.44 -- -- -0.434 8.66 989.4 310 12 5.74
267.56 0.764 16.3 -1.11 -- -- -- -- -0.658 -- -- -- -- --
167.82 0.606 16.2 -- 1.59 -- -- -- -0.561 6.98 -- -- -- --
143.99 0.559 16.2 -- -- -1.7 -- -- -0.43 -- 976 300 12 7.81
299.92 0.808 16.2 -- -- -- -- -- -0.535 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.90 atmosphere 1000.0 270 > th dose independent rect. 12 6
2 76.91 wind 7.0 270 < th dose independent rect. 12 6
3 77.17 atmosphere 995.0 270 > th dose dependent rect. 12 6
5 77.38 precipitation 0.1 270 < th dose independent rect. 18 18
6 77.38 precipitation 0.1 270 < th dose dependent rect. 18 18
7 77.59 atmosphere 995.0 270 > th dose independent rect. 13 4
8 77.71 atmosphere 995.0 270 > th dose dependent rect. 13 4
9 77.72 precipitation 0.1 270 < th dose independent rect. 17 20
10 77.72 precipitation 0.1 270 < th dose dependent rect. 17 20
11 77.73 wind 7.0 270 < th dose independent rect. 13 4
19 78.05 atmosphere 995.0 270 > th dose independent rect. 13 17
21 78.21 temperature 20.0 270 > th dose independent rect. 12 6
22 78.22 radiation 1.0 270 > th dose independent rect. 5 8
34 78.31 humidity 50.0 270 > th dose independent rect. 18 18
36 78.34 wind 7.0 270 < th dose independent rect. 1 16
37 78.36 atmosphere 1010.0 270 < th dose independent rect. 12 6
38 78.41 precipitation 0.1 270 < th dose independent rect. 12 6
39 78.41 precipitation 0.1 270 < th dose dependent rect. 12 6
40 78.43 temperature 10.0 270 > th dose independent rect. 12 6
43 78.43 temperature 10.0 270 > th dose independent rect. 18 18
46 78.53 radiation 1.0 270 > th dose independent rect. 13 4
48 78.57 wind 9.0 270 < th dose independent rect. 18 18
49 78.59 temperature 20.0 270 > th dose independent rect. 13 4
52 78.63 wind 9.0 270 < th dose independent rect. 13 17
56 78.76 temperature 10.0 270 > th dose independent rect. 13 4
58 78.76 atmosphere 1010.0 270 < th dose independent rect. 13 4
60 78.76 temperature 15.0 270 > th dose independent rect. 13 17
61 78.76 temperature 10.0 270 > th dose independent rect. 17 20
62 78.80 atmosphere 995.0 270 > th dose independent rect. 1 16
66 78.85 precipitation 0.1 270 < th dose independent rect. 6 7
67 78.85 precipitation 0.1 270 < th dose dependent rect. 6 7
68 78.87 atmosphere 995.0 270 > th dose independent rect. 18 18
78 78.93 temperature 10.0 270 > th dose independent rect. 6 7
79 78.93 atmosphere 995.0 270 > th dose independent rect. 6 7
80 78.93 atmosphere 1015.0 270 < th dose independent rect. 6 7
88 79.09 radiation 40.0 270 < th dose dependent rect. 23 9
89 79.13 wind 9.0 270 < th dose independent rect. 17 20
93 79.21 wind 9.0 270 < th dose independent rect. 6 7
95 79.28 humidity 50.0 270 > th dose independent rect. 17 8
96 79.38 radiation 10.0 270 < th dose independent rect. 17 8
98 79.42 humidity 50.0 270 > th dose independent rect. 6 7
100 79.47 radiation 20.0 270 < th dose dependent rect. 17 8
105 79.53 radiation 1.0 270 > th dose independent rect. 13 16
122 79.68 wind 1.0 270 > th dose independent rect. 6 7
124 79.69 temperature 15.0 270 > th dose independent rect. 1 16
140 79.72 temperature 10.0 270 > th dose independent rect. 17 8
145 79.72 atmosphere 1015.0 270 < th dose independent rect. 1 16
148 79.79 wind 9.0 270 < th dose independent rect. 17 8
153 79.91 temperature 15.0 270 > th dose independent rect. 23 9
154 79.95 radiation 30.0 270 < th dose independent rect. 23 9
157 80.00 temperature 30.0 270 < th dose independent rect. 23 9
158 80.00 humidity 50.0 270 > th dose independent rect. 23 9
160 80.00 atmosphere 995.0 270 > th dose independent rect. 23 9
162 80.00 temperature 10.0 270 > th dose independent rect. 8 15
163 80.01 wind 9.0 270 < th dose independent rect. 23 9
166 80.06 precipitation 0.1 270 < th dose independent rect. 17 8
167 80.06 precipitation 0.1 270 < th dose dependent rect. 17 8
170 80.13 atmosphere 1000.0 10 > th dose independent rect. 14 7
172 80.16 wind 1.0 270 > th dose independent rect. 12 6
173 80.16 humidity 50.0 270 > th dose dependent rect. 23 9
182 80.29 wind 1.0 270 > th dose independent rect. 13 4
183 80.30 temperature 10.0 270 > th dose dependent rect. 12 6
244 80.76 temperature 10.0 270 > th dose dependent rect. 13 4
249 80.82 wind 1.0 270 > th dose independent rect. 18 18
274 81.00 wind 9.0 270 < th dose independent rect. 8 15
281 81.06 precipitation 0.1 270 < th dose independent rect. 8 15
284 81.06 precipitation 0.1 270 < th dose dependent rect. 8 15
304 81.15 temperature 10.0 10 > th dose dependent rect. 14 7
341 81.28 humidity 90.0 270 < th dose independent rect. 13 4
343 81.29 atmosphere 1015.0 270 < th dose independent rect. 18 18
355 81.37 precipitation 0.1 270 < th dose independent rect. 1 16
358 81.37 precipitation 0.1 270 < th dose dependent rect. 1 16
361 81.42 precipitation 0.1 270 < th dose independent rect. 13 17
362 81.42 precipitation 0.1 270 < th dose dependent rect. 13 17
370 81.45 atmosphere 995.0 10 > th dose dependent rect. 14 7
379 81.52 precipitation 0.1 270 < th dose independent rect. 23 9
380 81.52 precipitation 0.1 270 < th dose dependent rect. 23 9
382 81.53 precipitation 0.1 10 < th dose independent rect. 14 7
383 81.53 precipitation 0.1 10 < th dose dependent rect. 14 7
387 81.55 wind 1.0 270 > th dose independent rect. 8 15
394 81.58 atmosphere 1015.0 270 < th dose independent rect. 23 9
409 81.63 radiation 1.0 270 < th dose dependent rect. 8 17
419 81.67 humidity 90.0 270 < th dose independent rect. 12 6
422 81.67 atmosphere 995.0 270 > th dose independent rect. 18 7
433 81.69 radiation 1.0 270 < th dose independent rect. 8 17
434 81.69 atmosphere 995.0 10 > th dose independent rect. 14 18
447 81.76 wind 9.0 10 < th dose independent rect. 14 7
450 81.79 precipitation 0.1 30 < th dose independent rect. 21 17
451 81.79 precipitation 0.1 30 < th dose dependent rect. 21 17
452 81.81 wind 1.0 10 > th dose independent rect. 8 6
455 81.83 radiation 1.0 270 < th dose dependent sin 17 NA
467 81.91 wind 1.0 270 > th dose independent rect. 18 7
469 81.91 radiation 40.0 10 < th dose independent rect. 14 18
479 81.94 wind 9.0 10 < th dose independent rect. 14 18
482 81.96 radiation 40.0 10 < th dose independent rect. 14 7
483 81.96 atmosphere 1015.0 270 < th dose independent rect. 7 16
492 82.05 temperature 30.0 270 < th dose independent rect. 18 7
498 82.07 temperature 15.0 10 > th dose independent rect. 14 18
513 82.12 temperature 10.0 10 > th dose independent rect. 14 7
515 82.12 atmosphere 1010.0 10 < th dose independent rect. 14 7
517 82.12 temperature 10.0 10 > th dose independent rect. 21 17
518 82.12 atmosphere 995.0 10 > th dose independent rect. 21 17
539 82.22 temperature 10.0 10 > th dose independent rect. 8 6
541 82.22 atmosphere 995.0 10 > th dose independent rect. 8 6
542 82.22 atmosphere 1015.0 10 < th dose independent rect. 8 6
543 82.22 precipitation 0.1 10 < th dose independent rect. 8 6
545 82.22 precipitation 0.1 10 < th dose dependent rect. 8 6
549 82.25 radiation 1.0 10 > th dose independent rect. 8 6
550 82.25 wind 1.0 90 > th dose independent rect. 14 7
558 82.28 wind 1.0 10 > th dose independent rect. 14 7
577 82.31 wind 9.0 270 < th dose dependent rect. 13 5
634 82.53 temperature 10.0 1440 > th dose independent rect. 15 7
637 82.53 wind 9.0 30 < th dose independent rect. 21 17
639 82.53 temperature 10.0 1440 > th dose independent rect. 22 17
669 82.59 wind 9.0 270 < th dose dependent rect. 23 8
677 82.63 wind 9.0 10 < th dose independent rect. 8 6
680 82.66 radiation 1.0 270 > th dose independent sin 16 NA
696 82.74 radiation 40.0 270 < th dose independent rect. 14 3
701 82.75 radiation 1.0 270 < th dose independent sin 16 NA
708 82.78 temperature 10.0 1440 > th dose independent rect. 9 6
713 82.78 temperature 10.0 1440 > th dose independent rect. 15 18
772 83.03 humidity 90.0 90 < th dose independent rect. 7 7
898 83.51 atmosphere 1015.0 270 < th dose independent rect. 18 7
959 83.62 radiation 40.0 10 < th dose dependent rect. 14 18