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Os04g0450900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase PKN/PRK1, effector domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.08 (0.029) R2 : 0.516
β1 : 1.03 (0.106) R2dD : 0.103 R2D : 0.0896
β2 : 1.34 (0.0694) R2dC : 0.397 R2C : 0.402
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.279 (0.062) R2dN8 : 0.0289 R2N8 : 0.00718
σ : 0.546
deviance : 135.83
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_____
C
peak time of C : 1.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
119.28 0.513 8.08 1.31 1.45 1.35 0.673 -1.29 0.175 1.11 51.7 1055 -- --
118.74 0.508 8.1 1.27 1.47 1.03 0.795 -- 0.156 1.04 52.43 978 -- --
121.06 0.512 8.08 1.29 1.45 1.35 -- -1.57 0.175 1.16 51.39 1054 -- --
119.84 0.51 8.11 1.18 1.46 0.861 -- -- 0.154 1.14 54.76 997 -- --
157.74 0.588 8.05 1.13 -- 0.919 -- 0.299 0.345 -- 74 23 -- --
134.68 0.544 8.07 1.05 1.34 -- 0.531 -- 0.282 1.16 -- -- -- --
135.83 0.546 8.08 1.03 1.34 -- -- -- 0.279 1.2 -- -- -- --
158.27 0.588 8.05 1.14 -- 0.921 -- -- 0.349 -- 73.26 23 -- --
154.89 0.58 8.13 -- 1.44 0.566 -- -- 0.0645 1.2 55 1020 -- --
246.88 0.734 8.06 1.08 -- -- -- -- 0.306 -- -- -- -- --
163.7 0.599 8.1 -- 1.36 -- -- -- 0.164 1.23 -- -- -- --
192.76 0.649 8.07 -- -- 0.901 -- -- 0.221 -- 73.26 23 -- --
277.65 0.778 8.08 -- -- -- -- -- 0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 117.14 humidity 60 720 > th dose independent rect. 15 6
2 117.85 humidity 70 720 > th dose independent rect. 17 4
4 118.14 humidity 60 720 > th dose independent rect. 15 14
5 118.32 humidity 70 720 > th dose independent rect. 17 2
12 118.63 humidity 60 720 > th dose independent rect. 15 12
13 118.64 humidity 70 720 > th dose independent rect. 17 10
15 118.85 humidity 60 1440 > th dose independent rect. 15 19
16 118.95 humidity 60 720 > th dose independent rect. 15 16
20 119.13 humidity 70 720 < th dose independent rect. 17 2
21 119.13 humidity 60 1440 < th dose independent rect. 14 20
24 119.18 humidity 60 1440 < th dose independent rect. 14 4
42 119.44 humidity 70 1440 < th dose dependent rect. 15 3
74 119.52 humidity 60 720 > th dose independent sin 12 NA
94 119.59 humidity 60 1440 < th dose dependent rect. 14 20
118 119.77 humidity 70 1440 < th dose dependent rect. 15 18
119 119.78 humidity 70 720 < th dose independent rect. 17 15
177 119.96 humidity 60 1440 < th dose independent sin 12 NA
194 120.01 humidity 60 1440 < th dose dependent sin 15 NA
466 121.07 humidity 60 1440 < th dose dependent no NA NA
627 121.37 humidity 50 1440 > th dose independent rect. 20 21
631 121.39 humidity 50 1440 > th dose independent rect. 8 9
633 121.39 humidity 50 1440 > th dose independent rect. 2 15
651 121.44 humidity 50 1440 > th dose independent rect. 10 7
729 121.62 temperature 30 720 < th dose independent rect. 17 10
779 122.00 humidity 80 270 < th dose dependent rect. 13 6
792 122.07 humidity 80 270 < th dose dependent rect. 13 8
858 122.30 humidity 50 1440 > th dose independent rect. 8 21
875 122.32 humidity 50 1440 > th dose independent rect. 8 14
880 122.32 humidity 50 1440 > th dose independent rect. 2 20
915 122.34 humidity 50 1440 > th dose independent rect. 10 19
932 122.35 humidity 50 1440 > th dose independent no NA NA