BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0450900 Os04g0450900|AK067842
         (470 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G40020.1  | chr4:18553453-18555300 REVERSE LENGTH=616          103   1e-22

>AT4G40020.1 | chr4:18553453-18555300 REVERSE LENGTH=616
          Length = 615

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 113/210 (53%), Gaps = 7/210 (3%)

Query: 105 DEIRALRCELRTAMQGEEKSRKALDDLSVALSDVTMEAKQVKMWXXXXXXXXXXXXXXXX 164
           +E+++++ EL++A   E  + KA+DDL++AL +V  +  Q K                  
Sbjct: 156 EEMKSVKNELKSATDAEMTNEKAMDDLALALKEVATDCSQTKEKLVIVETELEAARIESQ 215

Query: 165 XXXXXXDAAEARLRDVSDEHDRCRLDAEECAAAWGDKERVLLDCVRASEEEVNRERQENT 224
                 +        + +  +R R++AEE   AW  KE V + C++  E+E N    EN 
Sbjct: 216 QWKDKYEEVRKDAELLKNTSERLRIEAEESLLAWNGKESVFVTCIKRGEDEKNSLLDENN 275

Query: 225 KLVES-------QRVIRDENARLRDILKQAVAEANVVKESLELARGENARLNDVVAEKDG 277
           +L+E+        +  ++EN ++RDILKQA+ EANV KE+  +AR EN+ L D + +K+ 
Sbjct: 276 RLLEALVAAENLSKKAKEENHKVRDILKQAINEANVAKEAAGIARAENSNLKDALLDKEE 335

Query: 278 ALQSLRQEYECIKVSEAAAQGSLKELNSLL 307
            LQ   +E E +KV+EA A  ++K+L  +L
Sbjct: 336 ELQFALKEIERVKVNEAVANDNIKKLKKML 365



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.126    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,702,492
Number of extensions: 276181
Number of successful extensions: 1959
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1962
Number of HSP's successfully gapped: 2
Length of query: 470
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 368
Effective length of database: 8,310,137
Effective search space: 3058130416
Effective search space used: 3058130416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)