Os04g0422000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAP fibrillin family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0422000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : PAP fibrillin family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.56 | 0.347 | 11.5 | -1.54 | 0.665 | -1.99 | -1.16 | -4.36 | -0.643 | 23.2 | 0.63 | 1383 | -- | -- |
| 60.25 | 0.362 | 11.6 | -1.85 | 0.749 | -1.06 | -0.527 | -- | -0.747 | 23.4 | 2.42 | 1362 | -- | -- |
| 56.8 | 0.351 | 11.5 | -1.49 | 0.974 | -1.87 | -- | -4.18 | -0.643 | 23.4 | 0.6507 | 1445 | -- | -- |
| 61.25 | 0.364 | 11.6 | -1.86 | 0.71 | -1.08 | -- | -- | -0.733 | 23.7 | 2.45 | 1344 | -- | -- |
| 84.45 | 0.43 | 11.6 | -1.61 | -- | 0.657 | -- | -0.296 | -0.566 | -- | 0.5299 | 4102 | -- | -- |
| 72.68 | 0.4 | 11.6 | -1.68 | 0.965 | -- | -0.409 | -- | -0.585 | 23.4 | -- | -- | -- | -- |
| 73.39 | 0.401 | 11.6 | -1.67 | 0.966 | -- | -- | -- | -0.584 | 23.4 | -- | -- | -- | -- |
| 78.56 | 0.413 | 11.6 | -1.85 | -- | -1.56 | -- | -- | -0.76 | -- | 2.34 | 2626 | -- | -- |
| 138.01 | 0.547 | 11.6 | -- | 1.11 | -0.764 | -- | -- | -0.508 | 23.8 | 10 | 3143 | -- | -- |
| 131.97 | 0.537 | 11.6 | -1.64 | -- | -- | -- | -- | -0.574 | -- | -- | -- | -- | -- |
| 146.79 | 0.567 | 11.5 | -- | 0.949 | -- | -- | -- | -0.398 | 23.3 | -- | -- | -- | -- |
| 156.53 | 0.585 | 11.5 | -- | -- | 0.657 | -- | -- | -0.376 | -- | 2.34 | 2626 | -- | -- |
| 203.2 | 0.665 | 11.5 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.44 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 54.44 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 3 | 54.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 5 | 54.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 7 | 54.86 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 12 | 54.87 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 23 | 54.90 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 57 | 54.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 68 | 55.13 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 92 | 55.43 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 96 | 55.47 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 97 | 55.49 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 100 | 55.50 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 101 | 55.50 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 122 | 55.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 134 | 55.82 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 137 | 55.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 146 | 55.89 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 148 | 55.91 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 153 | 55.94 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 197 | 56.01 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 202 | 56.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 203 | 56.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 208 | 56.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 217 | 56.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 225 | 56.05 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 253 | 56.21 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 268 | 56.24 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 270 | 56.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 287 | 56.34 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 324 | 56.49 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 396 | 56.70 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 14 |
| 445 | 56.76 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 458 | 56.77 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 20 | NA |
| 473 | 56.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 478 | 56.78 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 492 | 56.78 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 562 | 56.82 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 563 | 56.82 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 579 | 56.82 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 580 | 56.82 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 651 | 56.86 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 686 | 56.88 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 742 | 56.91 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 794 | 56.94 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 822 | 56.96 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 938 | 57.03 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 940 | 57.03 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 966 | 57.05 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 981 | 57.06 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |