BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0422000 Os04g0422000|AK070660
         (278 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0422000  PAP fibrillin family protein                        456   e-129

>Os04g0422000 PAP fibrillin family protein
          Length = 278

 Score =  456 bits (1173), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/257 (87%), Positives = 226/257 (87%)

Query: 22  HRARCGIAXXXXXXXXXXXXLFLFXXXXXXXXXXXXXXXXXXXEHGLSQPQPQARAVGSY 81
           HRARCGIA            LFLF                   EHGLSQPQPQARAVGSY
Sbjct: 22  HRARCGIATTTTTSTSGRRGLFLFASRCRPGPRRRAASAAVPPEHGLSQPQPQARAVGSY 81

Query: 82  EAALGDAKDALYAALEGMNRGIFGMTSEKRSEIHALVELLESKNPTPEPTDKLQDKVDGC 141
           EAALGDAKDALYAALEGMNRGIFGMTSEKRSEIHALVELLESKNPTPEPTDKLQDKVDGC
Sbjct: 82  EAALGDAKDALYAALEGMNRGIFGMTSEKRSEIHALVELLESKNPTPEPTDKLQDKVDGC 141

Query: 142 WRLVYSTISILGKKRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSARALKILSGQLTI 201
           WRLVYSTISILGKKRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSARALKILSGQLTI
Sbjct: 142 WRLVYSTISILGKKRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSARALKILSGQLTI 201

Query: 202 EASYKITTKTKVDITLDSSTITPDQLMNIFQKNYDMLLAIFNPEGWLEITYVDESLRIGR 261
           EASYKITTKTKVDITLDSSTITPDQLMNIFQKNYDMLLAIFNPEGWLEITYVDESLRIGR
Sbjct: 202 EASYKITTKTKVDITLDSSTITPDQLMNIFQKNYDMLLAIFNPEGWLEITYVDESLRIGR 261

Query: 262 DDKANIFVLERADPSEV 278
           DDKANIFVLERADPSEV
Sbjct: 262 DDKANIFVLERADPSEV 278



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,846,351
Number of extensions: 243945
Number of successful extensions: 653
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)