BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0422000 Os04g0422000|AK070660
(278 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09820.2 | chr5:3056090-3057380 REVERSE LENGTH=274 252 1e-67
AT4G22240.1 | chr4:11766090-11767227 REVERSE LENGTH=311 66 2e-11
AT3G26070.1 | chr3:9526904-9528199 FORWARD LENGTH=243 63 2e-10
AT3G23400.1 | chr3:8376636-8378225 REVERSE LENGTH=285 60 1e-09
AT4G04020.1 | chr4:1932161-1933546 FORWARD LENGTH=319 59 4e-09
AT1G51110.1 | chr1:18935380-18937484 FORWARD LENGTH=410 55 3e-08
AT4G00030.1 | chr4:13565-14366 FORWARD LENGTH=213 49 4e-06
AT3G26080.1 | chr3:9528998-9530404 FORWARD LENGTH=235 48 6e-06
>AT5G09820.2 | chr5:3056090-3057380 REVERSE LENGTH=274
Length = 273
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 115/186 (61%), Positives = 151/186 (81%), Gaps = 1/186 (0%)
Query: 89 KDALYAALEGMNRGIFGMTSEKRSEIHALVELLESKNPTPEPTDKLQDKVDGCWRLVYST 148
K+ LY AL+G+NRGIFG+ S+K++EI LV+LLE +NPTPEPT +L DK+ GCW+L+YST
Sbjct: 87 KEELYEALKGINRGIFGVKSDKKTEIEGLVKLLECRNPTPEPTGEL-DKIGGCWKLIYST 145
Query: 149 ISILGKKRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSARALKILSGQLTIEASYKIT 208
I++LG KRTKLGLRDF+SLGD Q ID+ + K V+V+KF R L +L G+ I AS+KI+
Sbjct: 146 ITVLGSKRTKLGLRDFVSLGDLLQQIDIAQGKTVHVLKFDVRGLNLLDGEFRIVASFKIS 205
Query: 209 TKTKVDITLDSSTITPDQLMNIFQKNYDMLLAIFNPEGWLEITYVDESLRIGRDDKANIF 268
+K+ V+IT +SSTI PDQLMNIF+KN D+LL IFNPEG EI+Y+DE L++GRD K N+F
Sbjct: 206 SKSSVEITYESSTIKPDQLMNIFRKNMDLLLGIFNPEGLFEISYLDEDLQVGRDGKGNVF 265
Query: 269 VLERAD 274
VLER +
Sbjct: 266 VLERIE 271
>AT4G22240.1 | chr4:11766090-11767227 REVERSE LENGTH=311
Length = 310
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 44/220 (20%)
Query: 89 KDALYAALEGMNRGIFGMTSEKRSEIHALVELLESKNPTPEPTDKLQDKVDGCWRLVYST 148
K +L +L G +RG+ +SE R+EI L+ LESKNPTP PT+ L ++G W L Y++
Sbjct: 87 KRSLVDSLYGTDRGL-SASSETRAEIGDLITQLESKNPTPAPTEALF-LLNGKWILAYTS 144
Query: 149 ISILGKKRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSARALKILSGQLTIEASYKIT 208
L ++ G+ I + + Q ID N ++F+ + + ++ A ++I
Sbjct: 145 FVNLFPLLSR-GIVPLIKVDEISQTIDSDNFTVQNSVRFAG---PLGTNSISTNAKFEIR 200
Query: 209 TKTKVDITLDSSTITPDQLMNIF------------------------------------- 231
+ +V I + I QL +
Sbjct: 201 SPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTIS 260
Query: 232 -QKNYDMLLAIFNPEGWLEITYVDESLRIGRDDKANIFVL 270
Q L N + WL TY+D+ +RI R D ++FVL
Sbjct: 261 SQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVL 300
>AT3G26070.1 | chr3:9526904-9528199 FORWARD LENGTH=243
Length = 242
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 89 KDALYAALEGMNRGIFGMTSEKRSEIHALVELLESKNPTPEPTDKLQDKVDGCWRLVYST 148
K L A+E + RG + + + I L +E+ NPT EP D V+G W L+Y+T
Sbjct: 75 KQELLEAIEPLERGATA-SPDDQLRIDQLARKVEAVNPTKEPLK--SDLVNGKWELIYTT 131
Query: 149 -ISILGKKRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSARALKILSGQLTIEASYKI 207
SIL K+ + LR + +Q I+V K N+ + ++G + S K+
Sbjct: 132 SASILQAKKPRF-LRSITN----YQSINVDTLKVQNMETWPF--YNSVTGDIKPLNSKKV 184
Query: 208 TTKTKVDITLDSSTI-TPDQLMNIFQKNYDMLLAIFNPEGWLEITYVDESLRIGRDDKAN 266
K +V L I PD + G LEITYVDE LR+ R DK N
Sbjct: 185 AVKLQVFKILGFIPIKAPD-----------------SARGELEITYVDEELRLSRGDKGN 227
Query: 267 IFVLERADPS 276
+F+L+ DP+
Sbjct: 228 LFILKMFDPT 237
>AT3G23400.1 | chr3:8376636-8378225 REVERSE LENGTH=285
Length = 284
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 98 GMNRGIFGMTSE-KRSEIHALVELLESKNPTPEPTDKLQDKVDGCWRLVYSTI---SILG 153
G+NRG+ + +R+E+ A EL + P + TD L DK+ G WRL+YS+ LG
Sbjct: 97 GLNRGLVASVDDLERAEVAA-KELETAGGPV-DLTDDL-DKLQGKWRLLYSSAFSSRSLG 153
Query: 154 KKRTKLGLRDFI--SLGDFFQMIDVKEEKAVNVIKFSARA---LKILSGQLTIEASYKIT 208
R L I +LG FQ IDV + N+ + A L T+ +++
Sbjct: 154 GSRPGLPTGRLIPVTLGQVFQRIDVFSKDFDNIAEVELGAPWPFPPLEATATLAHKFELL 213
Query: 209 TKTKVDITLDSSTI-TPDQLMNIFQKNYDMLLAIFNPE-----GWLEITYVDESLRIGRD 262
K+ IT + +T+ T L I + L F P G E+TYVD+++RI R
Sbjct: 214 GTCKIKITFEKTTVKTSGNLSQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRG 273
Query: 263 DKANIFVL 270
D+ + V
Sbjct: 274 DRGELRVF 281
>AT4G04020.1 | chr4:1932161-1933546 FORWARD LENGTH=319
Length = 318
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 52/224 (23%)
Query: 89 KDALYAALEGMNRGIFGMTSEKRSEIHALVELLESKNPTPEPTDKLQDKVDGCWRLVYST 148
K +L +L G +RG+ ++S+ R+EI L+ LESKNPTP P + L ++G W L Y++
Sbjct: 95 KRSLADSLYGTDRGL-SVSSDTRAEISELITQLESKNPTPAPNEALF-LLNGKWILAYTS 152
Query: 149 ----ISILGKKRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSARALKILSGQLTIEAS 204
+L ++ + + + + Q ID N ++F+ + + A
Sbjct: 153 FVGLFPLLSRR-----IEPLVKVDEISQTIDSDSFTVQNSVRFAG---PFSTTSFSTNAK 204
Query: 205 YKITTKTKVDITLDSSTITPDQLMNIF--------------------------------- 231
++I + +V I + I QL +
Sbjct: 205 FEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQKIDLNPIKGLLTSVQDTASSVA 264
Query: 232 -----QKNYDMLLAIFNPEGWLEITYVDESLRIGRDDKANIFVL 270
Q L N + WL TY+D+ LRI R D +++VL
Sbjct: 265 RTISNQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDGGSVYVL 308
>AT1G51110.1 | chr1:18935380-18937484 FORWARD LENGTH=410
Length = 409
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 82 EAALGDAKDALYAALEGMNRGIFGMTSEKRSEIHALVELLESKNPTPEPTDKLQDKVDGC 141
+++ DA+ L AL G+ + ++ +++ + V++LE PTD D ++G
Sbjct: 68 QSSFNDAELKLIDALIGIQGRGKSASPKQLNDVESAVKVLEGLEGIQNPTD--SDLIEGR 125
Query: 142 WRLVYSTISILGK--KRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSARALKILSGQL 199
WRL+++T +RT G+ F D + + + + N++KFS G+L
Sbjct: 126 WRLMFTTRPGTASPIQRTFTGVDVFTVFQDVY-LKATNDPRVSNIVKFSD-----FIGEL 179
Query: 200 TIEASYKITTKTKVDITLDSSTITPDQLMNIFQKNYDMLLAIFNPE--GWLEITYVDES- 256
+EA I +V D + D F+ Y + + E GWL+ TY+ S
Sbjct: 180 KVEAVASIKDGKRVLFRFDRAAF--DLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPSG 237
Query: 257 -LRIGRDDKANIFVLER 272
LRI R +K FVL++
Sbjct: 238 NLRISRGNKGTTFVLQK 254
>AT4G00030.1 | chr4:13565-14366 FORWARD LENGTH=213
Length = 212
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 109 EKRSEIHALVELLESKNPTPEPTDKLQDKVDGCWRLVYSTISILGKKRTKLGLRDFISLG 168
+KR EI V +ES + D + WRL+++T K GL + G
Sbjct: 58 KKRDEI---VNAIESMTVIGRSSITTDDSLSATWRLLWTTEKEQLFIIEKAGLFG-TTAG 113
Query: 169 DFFQMIDVKEEKAVNVIKFSARALKILSGQLTIEASYKITTKTKVDITLDSSTITPDQLM 228
D Q+IDV + NVI F G + + I + +V+ +S+ +
Sbjct: 114 DVLQVIDVNKRILNNVITFPP------DGVFFVRSDIDIASPQRVNFRFNSAVLR----- 162
Query: 229 NIFQKNYDMLLAIFNPEGWLEITYVDESLRIGRDDKANIFVLERA 273
KN+++ L F +GW E Y+D +R+ +D + + +++RA
Sbjct: 163 ---GKNWELPLPPFG-KGWFENVYMDGEIRVAKDIRGDYLIVDRA 203
>AT3G26080.1 | chr3:9528998-9530404 FORWARD LENGTH=235
Length = 234
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 76 RAVGSYEAALGDA------KDALYAALEGMNRGIFGMTSEKRSEIHALVELLESKNPTPE 129
+AV S+ G A K L A+E + RG + + + I L +E+ NPT E
Sbjct: 47 QAVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATA-SPDDQLLIDQLARKVEAVNPTKE 105
Query: 130 PTDKLQDKVDGCWRLVYSTISILGKKRTKLGLRDFISLGDFFQMIDVKEEKAVNVIKFSA 189
P D ++G W L+Y+T + + + + LR + +Q I++ K + +
Sbjct: 106 PLK--SDLINGKWELIYTTSAAILQAKKPRFLRSLTN----YQCINMDTLKVQRMETWPF 159
Query: 190 RALKILSGQLTIEASYKITTKTKVDITLDSSTI-TPDQLMNIFQKNYDMLLAIFNPEGWL 248
++G LT S + K +V L + PD G L
Sbjct: 160 --YNSVTGDLTPLNSKTVAVKLQVFKILGFIPVKAPDG----------------TARGEL 201
Query: 249 EITYVDESLRIGRDDKANIFVLERADPS 276
EITYVDE LRI R +F+L+ DP+
Sbjct: 202 EITYVDEELRISRGKGNLLFILKMFDPT 229
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,517,348
Number of extensions: 170726
Number of successful extensions: 495
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 8
Length of query: 278
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 181
Effective length of database: 8,447,217
Effective search space: 1528946277
Effective search space used: 1528946277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)