Os04g0421900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0421900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.35 | 0.507 | 6.39 | 0.683 | 0.673 | 1.58 | -0.478 | -0.428 | 0.197 | 8.88 | 25.11 | 77 | -- | -- |
| 116.64 | 0.503 | 6.39 | 0.624 | 0.679 | 1.62 | -0.398 | -- | 0.185 | 8.89 | 25.1 | 73 | -- | -- |
| 117.08 | 0.504 | 6.39 | 0.659 | 0.677 | 1.59 | -- | -0.274 | 0.198 | 8.95 | 25.1 | 77 | -- | -- |
| 117.19 | 0.504 | 6.4 | 0.614 | 0.682 | 1.62 | -- | -- | 0.192 | 8.93 | 25.09 | 73 | -- | -- |
| 135.8 | 0.543 | 6.39 | 0.774 | -- | 1.53 | -- | -0.848 | 0.252 | -- | 26.64 | 309 | -- | -- |
| 154.11 | 0.582 | 6.47 | 0.23 | 0.663 | -- | -0.625 | -- | -0.137 | 7.17 | -- | -- | -- | -- |
| 155.13 | 0.583 | 6.47 | 0.218 | 0.661 | -- | -- | -- | -0.135 | 7.25 | -- | -- | -- | -- |
| 136.72 | 0.545 | 6.41 | 0.626 | -- | 1.58 | -- | -- | 0.216 | -- | 26.27 | 293 | -- | -- |
| 126.06 | 0.523 | 6.42 | -- | 0.685 | 1.41 | -- | -- | 0.115 | 8.69 | 25.1 | 72 | -- | -- |
| 178.31 | 0.624 | 6.49 | 0.229 | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
| 156.38 | 0.585 | 6.48 | -- | 0.664 | -- | -- | -- | -0.159 | 7.22 | -- | -- | -- | -- |
| 146.11 | 0.563 | 6.43 | -- | -- | 1.35 | -- | -- | 0.103 | -- | 26.38 | 288 | -- | -- |
| 179.7 | 0.626 | 6.49 | -- | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 17 |
| 5 | 110.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 9 | 110.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 15 | 111.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 60 | 114.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 63 | 114.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 67 | 114.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 108 | 116.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 111 | 116.52 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 114 | 116.57 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 124 | 116.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 142 | 117.16 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 151 | 117.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 158 | 117.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 184 | 117.85 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 190 | 117.89 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 199 | 118.06 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 260 | 118.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 270 | 118.93 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 272 | 118.94 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 281 | 118.99 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 287 | 119.05 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 317 | 119.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 330 | 119.56 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 364 | 119.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 386 | 120.24 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 461 | 121.09 | temperature | 25 | 90 | < th | dose dependent | sin | 7 | NA |
| 467 | 121.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 472 | 121.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 483 | 121.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 497 | 121.34 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 10 |
| 500 | 121.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 517 | 121.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 518 | 121.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 526 | 121.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 595 | 122.04 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 649 | 122.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 679 | 122.53 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 736 | 122.85 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 14 |
| 747 | 122.91 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 21 |
| 751 | 122.93 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 763 | 122.94 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 766 | 122.96 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 9 |
| 778 | 123.00 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 18 |
| 796 | 123.11 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 799 | 123.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 845 | 123.35 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 876 | 123.47 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 16 |
| 880 | 123.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 974 | 123.82 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 12 |