BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0421900 Os04g0421900|AK066958
         (1101 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0421900  Conserved hypothetical protein                     2104   0.0  
AK111155                                                          194   2e-49

>Os04g0421900 Conserved hypothetical protein
          Length = 1101

 Score = 2104 bits (5452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1028/1101 (93%), Positives = 1028/1101 (93%)

Query: 1    MASDSDVDEDELLQMALQEQAARDLSHQRPAGAGKPVVNLVRPPANSSXXXXXXXXXXXX 60
            MASDSDVDEDELLQMALQEQAARDLSHQRPAGAGKPVVNLVRPPANSS            
Sbjct: 1    MASDSDVDEDELLQMALQEQAARDLSHQRPAGAGKPVVNLVRPPANSSRGGGGGGRGGGG 60

Query: 61   PAKARQPSRXXXXXXXXXSEVEMLSISSGDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            PAKARQPSR         SEVEMLSISSGDED                            
Sbjct: 61   PAKARQPSRGGGDDDDDDSEVEMLSISSGDEDGAPSSRDRGPPPPRGGGRAGARRAASRD 120

Query: 121  XXXXXXXEPRSWKRVDEAELARRVREMREGGXXXXXXXXXXXXXXXXXLTNVQTLPRGVE 180
                   EPRSWKRVDEAELARRVREMREGG                 LTNVQTLPRGVE
Sbjct: 121  DGDFDDDEPRSWKRVDEAELARRVREMREGGAAPTVDQKAAAAATRKALTNVQTLPRGVE 180

Query: 181  VLDPLGLGVIDNKSLRLITDASVSSPVSREKAQGLDPSMREKVIYSSPNFDPKVFLSWVH 240
            VLDPLGLGVIDNKSLRLITDASVSSPVSREKAQGLDPSMREKVIYSSPNFDPKVFLSWVH
Sbjct: 181  VLDPLGLGVIDNKSLRLITDASVSSPVSREKAQGLDPSMREKVIYSSPNFDPKVFLSWVH 240

Query: 241  KDTSAADLESGALTLKTDLKGRTQQKKQLVKENFDCFVSCKTTIDDIESKLRQIEEDPEG 300
            KDTSAADLESGALTLKTDLKGRTQQKKQLVKENFDCFVSCKTTIDDIESKLRQIEEDPEG
Sbjct: 241  KDTSAADLESGALTLKTDLKGRTQQKKQLVKENFDCFVSCKTTIDDIESKLRQIEEDPEG 300

Query: 301  AGTAHLYSVTQKISGVANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSAIRGNIRK 360
            AGTAHLYSVTQKISGVANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSAIRGNIRK
Sbjct: 301  AGTAHLYSVTQKISGVANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSAIRGNIRK 360

Query: 361  GEYDLAVREYQKAKSIVLPSHVGILKRVLEEVEKVMQEFRGMLYKSMEDPHLDLAELENI 420
            GEYDLAVREYQKAKSIVLPSHVGILKRVLEEVEKVMQEFRGMLYKSMEDPHLDLAELENI
Sbjct: 361  GEYDLAVREYQKAKSIVLPSHVGILKRVLEEVEKVMQEFRGMLYKSMEDPHLDLAELENI 420

Query: 421  VRLLLELEPETDPVWHYLNIQNSRIHGLFEKCTLDHEARMEVLQNKIREKILSDAKWRQL 480
            VRLLLELEPETDPVWHYLNIQNSRIHGLFEKCTLDHEARMEVLQNKIREKILSDAKWRQL
Sbjct: 421  VRLLLELEPETDPVWHYLNIQNSRIHGLFEKCTLDHEARMEVLQNKIREKILSDAKWRQL 480

Query: 481  QQDSNKSLEVDSATGDSFQDDQLSTNIMADEADSLRAAYIRRLTAVLIQHVPAFWRLALS 540
            QQDSNKSLEVDSATGDSFQDDQLSTNIMADEADSLRAAYIRRLTAVLIQHVPAFWRLALS
Sbjct: 481  QQDSNKSLEVDSATGDSFQDDQLSTNIMADEADSLRAAYIRRLTAVLIQHVPAFWRLALS 540

Query: 541  VFSGKFAKAAAGNVLSDSDMNTKQSVNKTDDKGGEAKYTNHTLDEVASMVRATVSAFDTK 600
            VFSGKFAKAAAGNVLSDSDMNTKQSVNKTDDKGGEAKYTNHTLDEVASMVRATVSAFDTK
Sbjct: 541  VFSGKFAKAAAGNVLSDSDMNTKQSVNKTDDKGGEAKYTNHTLDEVASMVRATVSAFDTK 600

Query: 601  VQNTFRDFEECNILRPFMGDTIKEIAKACLTLEGKDSSPTAVKMLRALHYEITKLYILRL 660
            VQNTFRDFEECNILRPFMGDTIKEIAKACLTLEGKDSSPTAVKMLRALHYEITKLYILRL
Sbjct: 601  VQNTFRDFEECNILRPFMGDTIKEIAKACLTLEGKDSSPTAVKMLRALHYEITKLYILRL 660

Query: 661  CSWMRATTKEISKYETWFTLTTLERNKSLYAISSMPLEFRDIIVSAMDRIDFMVLNLRSE 720
            CSWMRATTKEISKYETWFTLTTLERNKSLYAISSMPLEFRDIIVSAMDRIDFMVLNLRSE
Sbjct: 661  CSWMRATTKEISKYETWFTLTTLERNKSLYAISSMPLEFRDIIVSAMDRIDFMVLNLRSE 720

Query: 721  TAKSYDISQHLHEIHESVRLAFLNSFLDFAGYLERFGGELAQNRSNKENNHTQNGYVNGT 780
            TAKSYDISQHLHEIHESVRLAFLNSFLDFAGYLERFGGELAQNRSNKENNHTQNGYVNGT
Sbjct: 721  TAKSYDISQHLHEIHESVRLAFLNSFLDFAGYLERFGGELAQNRSNKENNHTQNGYVNGT 780

Query: 781  NSETSAGMDGDLYKKLLVVLSNIGYCKAELSDELYTKYRHIWSPVRDNDERSADMRDLMT 840
            NSETSAGMDGDLYKKLLVVLSNIGYCKAELSDELYTKYRHIWSPVRDNDERSADMRDLMT
Sbjct: 781  NSETSAGMDGDLYKKLLVVLSNIGYCKAELSDELYTKYRHIWSPVRDNDERSADMRDLMT 840

Query: 841  SFSALEEKVLEQYTFAKSNLIRNAARNYLLDYGIHWGAAPAVKGIRDAALDLLHILVAVH 900
            SFSALEEKVLEQYTFAKSNLIRNAARNYLLDYGIHWGAAPAVKGIRDAALDLLHILVAVH
Sbjct: 841  SFSALEEKVLEQYTFAKSNLIRNAARNYLLDYGIHWGAAPAVKGIRDAALDLLHILVAVH 900

Query: 901  AEVYSGARPLLEKAMTILVEGLIDIFLSIFHENKTKELRMLDANGFCQLMLELEYFETIL 960
            AEVYSGARPLLEKAMTILVEGLIDIFLSIFHENKTKELRMLDANGFCQLMLELEYFETIL
Sbjct: 901  AEVYSGARPLLEKAMTILVEGLIDIFLSIFHENKTKELRMLDANGFCQLMLELEYFETIL 960

Query: 961  RTYLSTEAEQALRSLQENLLEKACESVTEALENPGHHRRPTRGSEDAASDDRQSVSPDDL 1020
            RTYLSTEAEQALRSLQENLLEKACESVTEALENPGHHRRPTRGSEDAASDDRQSVSPDDL
Sbjct: 961  RTYLSTEAEQALRSLQENLLEKACESVTEALENPGHHRRPTRGSEDAASDDRQSVSPDDL 1020

Query: 1021 LALAQQCSSDLLQGELEKTRLNIACFMESTLQSTPAPAGSKPAAYQSYKAPATHQPVQVS 1080
            LALAQQCSSDLLQGELEKTRLNIACFMESTLQSTPAPAGSKPAAYQSYKAPATHQPVQVS
Sbjct: 1021 LALAQQCSSDLLQGELEKTRLNIACFMESTLQSTPAPAGSKPAAYQSYKAPATHQPVQVS 1080

Query: 1081 SPSFRRQQTSTNSPAASRRRR 1101
            SPSFRRQQTSTNSPAASRRRR
Sbjct: 1081 SPSFRRQQTSTNSPAASRRRR 1101



>AK111155 
          Length = 886

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 201/806 (24%), Positives = 349/806 (43%), Gaps = 71/806 (8%)

Query: 213 QGLDPSMREKVIYSSPNFDPKVFLSWVHKDTSAADLESGALTLKTDLKGRTQQKKQLVKE 272
           +GL   ++ +   SS  FD KVFLS +H D + ADL  G L LK  +  R++  K LV++
Sbjct: 59  RGLPKDVKTQTSLSSKAFDAKVFLSTIHPDATFADLSHGILHLKNSIDQRSEALKVLVED 118

Query: 273 NFDCFVSCKTTIDDIESKLRQIEEDP----EGAGTAHLYSVTQKISGVANRAFEPLFERQ 328
           NFD FV+ K T D +  ++R  E  P       G A L ++    S  A++ F P+ E  
Sbjct: 119 NFDRFVAVKATTDGVFREMRDTESGPLQPHADYGVASLNTILANASAKADQVFMPVLENN 178

Query: 329 AQAEKIRSVQGMLQRFRTLFNLPSAIRGNIRKGEYDLAVREYQKAKSIV----------- 377
            +  K+RS  G+ +R +  FNLP ++  ++  G YD+A+R+Y+K K ++           
Sbjct: 179 LKTIKLRSTLGVFERSKFFFNLPGSLSESVESGRYDMALRDYKKGKYLLDSRPGQLLAVG 238

Query: 378 ---LPSHVG----------ILKRVLEEVEKVMQEFRGMLYKSMEDPHLDLAELENIVRLL 424
              LP   G          +  +V + VE  M++ +  L   + +P  ++ E E  + +L
Sbjct: 239 SAKLPESAGGARGDVQQKRVFAKVWDAVEATMKDMQSRLTAQLREPRRNVDEQERTIEIL 298

Query: 425 LELEPETDPVWHYLNIQNSRIHGLFEKCTLDHEARMEVLQNKIREKILSDAKWRQLQQDS 484
           LEL+P  DPV  YL  Q+  +  +         +R+E  +   R    S    R   +D 
Sbjct: 299 LELDPTDDPVSIYLEAQHQHLRSVMRNTFDAGVSRIEATRAGQRPS--SSVAERDRARDL 356

Query: 485 NKSLEVDSATGDSFQDDQLSTNIMADEADSLRAAYIRRLTAVLIQHVPAFWRLALSVFSG 544
            KS+ +      SF  D+ +    ADE  ++R   ++ L+  ++  +P+FWR+A +   G
Sbjct: 357 QKSMRLAGQLDASF--DKCTG---ADEWRAIRD-LVKALSDTMLGGLPSFWRVAKNHAEG 410

Query: 545 KF--AKAAAGNVLSDSDMNTKQSVNKTDDKGGEAKYTNH--TLDEVASMVRATVSAFDTK 600
           KF   KA AG       ++ +      +         +H  +L +V+ ++R  +      
Sbjct: 411 KFIKTKARAGAGAGGDKVSAQNKAWAVEALEAYISLVSHLFSLTDVSILMRQPLPPVAAW 470

Query: 601 VQNTFRDFEECNILRPFMGDTIKEIAKAC--LTLEGKDSSPTAVKMLRALHYEITKLYIL 658
           V          + LR    +T+  +  AC  L   G  S+ T    LRAL       ++ 
Sbjct: 471 VPAGTSSATAAHFLR----ETLAHVVDACNDLAALGIASATT----LRALLTNARFCFVQ 522

Query: 659 RLCSWMRATTKEISKYETWFTLTTLERNKSLY--AISSM-PLEFRDIIVSAMDRIDFMVL 715
            +C   +   K     E W TL   E+  +L+  AI++      R     A  R     +
Sbjct: 523 VVCVLWQEDAKIFHLLEDW-TLNPDEQATTLHLRAIAAFHKSNARQAFHLAGGRSASTPV 581

Query: 716 NLRSETAKSYDISQHL-HEIHESVRLAFLNSFLDFAGYLERFGGELAQNRSNKENNHTQN 774
           ++     K+    Q +  E    ++ AFL++   F   +     +LA +  +     T  
Sbjct: 582 SVLEARGKNRAAEQPVASEFTTRIKGAFLDALYAFLDGMV----QLAFSEYSPLEPRTAL 637

Query: 775 GYVNGTNSETSAGMD-GDLYKKLLVVLSNIGYCKAELSDELYTKYRHIWSPVRDNDERSA 833
             V     +  + +D  DL  ++L+ ++N+ +    +   L  ++   ++   D+D    
Sbjct: 638 S-VQAVPGQPGSSVDVRDLDTRVLLSVTNLAHLTRSVIPGLVKQFSDAYAVKMDDD---- 692

Query: 834 DMRDLMTSFSALEEKVLEQYTFAKSNLIRNAARNYLLDYGIHWGAAPAVKGIRDAALDLL 893
            +  L      L+  +   Y   KS  +       +L+ GI W + P   G+     + L
Sbjct: 693 -LATLAEVAVQLDAILFNDYVQRKSGALSPIISRGILESGIDWASIPKPSGVHSFIYEAL 751

Query: 894 HILVAVHAEVYSGARPLLEKAMTILVEGLIDIFLSIFHENKTKELRMLDANGFCQLMLEL 953
             LV VHA V S A+PL+ + +T LV+ L    L  F     + +      G  Q  LE+
Sbjct: 752 LSLVEVHAHVRSIAKPLVTRTITTLVDDLTATTLDAF-----QRIGRFGMGGMLQATLEI 806

Query: 954 EYFETILRTYLSTEAEQALRSLQENL 979
           E+   +L  Y+S +AEQ L+ + E +
Sbjct: 807 EFLHQMLAAYISPQAEQRLKDVYETI 832



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,657,414
Number of extensions: 1302307
Number of successful extensions: 3978
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3972
Number of HSP's successfully gapped: 3
Length of query: 1101
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 990
Effective length of database: 11,240,047
Effective search space: 11127646530
Effective search space used: 11127646530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)