Os04g0414100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ovarian tumour, otubain domain containing protein.
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Os04g0414100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ovarian tumour, otubain domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.54 | 0.264 | 11.5 | -0.717 | 0.506 | 0.504 | 0.00178 | 0.917 | 0.00252 | 9.16 | 30.3 | 4481 | -- | -- |
| 31.45 | 0.261 | 11.5 | -0.878 | 0.546 | 0.602 | 0.0272 | -- | -0.0184 | 9.07 | 29.8 | 4982 | -- | -- |
| 31.54 | 0.262 | 11.5 | -0.718 | 0.506 | 0.504 | -- | 0.915 | 0.00249 | 9.16 | 30.3 | 4481 | -- | -- |
| 31.44 | 0.261 | 11.5 | -0.877 | 0.54 | 0.595 | -- | -- | -0.0236 | 9.02 | 29.83 | 4982 | -- | -- |
| 44.62 | 0.311 | 11.5 | -0.698 | -- | 0.49 | -- | 0.416 | -0.0346 | -- | 29.9 | 5828 | -- | -- |
| 45.26 | 0.315 | 11.5 | -0.711 | 0.489 | -- | -0.0555 | -- | -0.11 | 8.88 | -- | -- | -- | -- |
| 45.27 | 0.315 | 11.5 | -0.713 | 0.489 | -- | -- | -- | -0.11 | 8.89 | -- | -- | -- | -- |
| 44.06 | 0.309 | 11.5 | -0.876 | -- | 0.541 | -- | -- | -0.0576 | -- | 29.8 | 5828 | -- | -- |
| 50.51 | 0.331 | 11.5 | -- | 0.502 | 0.468 | -- | -- | 0.0702 | 9.22 | 30.63 | 4475 | -- | -- |
| 58.94 | 0.359 | 11.5 | -0.713 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 58.67 | 0.358 | 11.5 | -- | 0.488 | -- | -- | -- | -0.0311 | 9 | -- | -- | -- | -- |
| 63.44 | 0.371 | 11.5 | -- | -- | 0.421 | -- | -- | 0.0321 | -- | 30.8 | 5860 | -- | -- |
| 72.35 | 0.397 | 11.5 | -- | -- | -- | -- | -- | -0.0279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.81 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 2 | 30.84 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 4 | 30.89 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 7 | 30.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 11 | 30.97 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 14 | 31.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 15 | 31.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 87 | 31.29 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 88 | 31.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 116 | 31.35 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 130 | 31.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 145 | 31.38 | temperature | 30 | 4320 | > th | dose independent | sin | 15 | NA |
| 147 | 31.38 | temperature | 30 | 4320 | < th | dose independent | sin | 15 | NA |
| 149 | 31.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 163 | 31.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 172 | 31.43 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 6 |
| 189 | 31.44 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 241 | 31.49 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 260 | 31.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 271 | 31.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 339 | 31.53 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 409 | 31.58 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 508 | 31.59 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 514 | 31.60 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 636 | 31.62 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 659 | 31.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 729 | 31.71 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 745 | 31.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 772 | 31.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 824 | 31.75 | temperature | 30 | 4320 | > th | dose dependent | sin | 23 | NA |
| 835 | 31.76 | temperature | 30 | 4320 | > th | dose dependent | sin | 21 | NA |
| 915 | 31.80 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 916 | 31.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |