BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0414100 Os04g0414100|AK101471
(550 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27350.5 | chr2:11699780-11702363 REVERSE LENGTH=507 419 e-117
AT5G67170.1 | chr5:26799851-26801763 FORWARD LENGTH=376 78 1e-14
AT3G62940.2 | chr3:23263106-23264245 REVERSE LENGTH=333 66 4e-11
AT5G04250.1 | chr5:1176397-1178492 FORWARD LENGTH=346 64 2e-10
AT5G03330.1 | chr5:807728-809608 FORWARD LENGTH=357 55 1e-07
AT3G22260.2 | chr3:7871489-7873393 FORWARD LENGTH=246 54 2e-07
AT3G02070.1 | chr3:361368-363132 FORWARD LENGTH=220 53 4e-07
>AT2G27350.5 | chr2:11699780-11702363 REVERSE LENGTH=507
Length = 506
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/390 (56%), Positives = 263/390 (67%), Gaps = 16/390 (4%)
Query: 165 NNGLRRMGSGSSNNARIGSSRRPVAWXXXXXXXXXXX-XXXXXXXXLADSEGYNSADEQG 223
N G R GS RIG +RR +++EGYNS+DE
Sbjct: 129 NPGSNRSVLGSFGALRIGPTRRAAGPRSLVSSRSSPTGSHPSSPRSHSENEGYNSSDEHM 188
Query: 224 PCYASNYYDS--ERERMFEHDLRRVRGFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQ 281
PCY ++ S ERE FE ++R +GFEI +M EDGNCLFRAVADQVYGD EAYD+ARQ
Sbjct: 189 PCYVPSHPGSGLEREHQFEAEIRYSKGFEIRRMLEDGNCLFRAVADQVYGDSEAYDLARQ 248
Query: 282 MCVDYMERERDHFSQFMTEGFTSYCRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEP 341
MC+DYME+ERDHFSQF+TEGFTSY +RKRRDKVYGNN+EIQA AEMYNRPIHIYSYSTEP
Sbjct: 249 MCMDYMEQERDHFSQFITEGFTSYLKRKRRDKVYGNNVEIQALAEMYNRPIHIYSYSTEP 308
Query: 342 INIFQGSYNTDVPPIRLSYHHGNHYNSVVDPRGLTVGAGLGFSSLRGTNNVDRXXXXXXX 401
INIFQG+Y+TD PPIRLSYHHGNHYNS+VDP LTVGAGLGFSSL G +VD+
Sbjct: 309 INIFQGNYSTDTPPIRLSYHHGNHYNSLVDPHRLTVGAGLGFSSLSG-RHVDKEQVKAAI 367
Query: 402 XXXXXXXXENALLAEGRLYSDLELTEKEIERMVMEASRAEYLKQ-QQQQLNFREXXXXXX 460
+NALLAEGR YSDLELTEKEIER VMEASRAEYL + + ++ +E
Sbjct: 368 KAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLMEWSKPRIGPKESSTSNA 427
Query: 461 XXXXXXXXXXXXXXXXXXDRVGEECFVLPDTVLTRSMQLLLAMGFNYIQVMEAYSIFGED 520
+ V E+ TVL+ S++++L+MGF+Y Q MEAYSIFG+D
Sbjct: 428 ETSSSGATGPSGSDSKPAEAVKEK------TVLSSSIEMVLSMGFSYAQAMEAYSIFGDD 481
Query: 521 VDSMIYYLVEMGGTGASAGGSNRRKGKAAE 550
VDSM+ Y++E S GG+NRRKGKA E
Sbjct: 482 VDSMVCYVLE-----TSCGGNNRRKGKATE 506
>AT5G67170.1 | chr5:26799851-26801763 FORWARD LENGTH=376
Length = 375
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 248 GFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQMCVDYMERERDHFSQFMTEG--FTSY 305
G +I ++ DGNC FRA+ADQ+ G+ + ++ R M V Y+ + R+ F F+ + F Y
Sbjct: 36 GLKIIQVTADGNCFFRAIADQLEGNEDEHNKYRNMIVLYIVKNREMFEPFIEDDVPFEDY 95
Query: 306 CRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQGSYNTDVPPIRLSYHHGNH 365
C+ D + NME+QA + + I I+ + P + +T I LSYH G H
Sbjct: 96 CKTMDDDGTWAGNMELQAASLVTRSNICIH-RNMSPRWYIRNFEDTRTRMIHLSYHDGEH 154
Query: 366 YNSV 369
YNSV
Sbjct: 155 YNSV 158
>AT3G62940.2 | chr3:23263106-23264245 REVERSE LENGTH=333
Length = 332
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 29/149 (19%)
Query: 248 GFEINKMAEDGNCLFRAVADQVY-----GDPEAYDMARQMCVDYMERERDHFSQFM---- 298
G ++++ DG+CL+RAV +Q+ P Y R+M YM R+H + F+
Sbjct: 180 GLTVSEIKPDGHCLYRAVENQLANRSGGASPYTYQNLREMAASYM---REHKTDFLPFFL 236
Query: 299 --TEG----------FTSYCRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQ 346
TEG F YCR +G+ +E+ A + I +YS S + + +
Sbjct: 237 SETEGDSNSGSAEERFEKYCREVESTAAWGSQLELGALTHCLRKHIKVYSGSFPDVEMGK 296
Query: 347 GSYNTDVPPIRLSYHH-----GNHYNSVV 370
+ D + LSYH G HYNSVV
Sbjct: 297 EYRSGDDSSLMLSYHRHAFGLGEHYNSVV 325
>AT5G04250.1 | chr5:1176397-1178492 FORWARD LENGTH=346
Length = 345
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 17/156 (10%)
Query: 233 SERERMFEHDLRRVRGFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQMCVDYMERERD 292
S+ ER+F+ ++ G NK+ DGNC FR+++DQ+Y PE ++ R+ V+ + R+
Sbjct: 190 SDHERLFQR--LQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQVVNQLAYNRE 247
Query: 293 HFSQFMTEGFTSYCRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQGSYNTD 352
+ ++ + Y + +R+ +G+++ +QA A+++ + + I F+ + +
Sbjct: 248 IYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADLFGVRMFV-------ITSFKDTCYIE 300
Query: 353 VPP--------IRLSYHHGNHYNSVVDPRGLTVGAG 380
+ P I LS+ HYNS+ L + G
Sbjct: 301 ILPHFQKSNRLICLSFWAEVHYNSIYPEGELPIPEG 336
>AT5G03330.1 | chr5:807728-809608 FORWARD LENGTH=357
Length = 356
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 234 ERERMFEHDLRRVR----GFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQMCVDYMER 289
E E + +H+ R R F K+ DGNC FRA+ADQ+Y + + R+ V ++
Sbjct: 194 EEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRALADQLYKTADRHKHVRRQIVKQLKS 253
Query: 290 ERDHFSQFMTEGFTSYCRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQGSY 349
D + ++ F+ Y R+ R +G+++ +QA A+ Y I + + F+ +
Sbjct: 254 RPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAADAYRVKIVV-------LTSFKDTC 306
Query: 350 NTDVPP--------IRLSYHHGNHYNSV 369
++ P I LS+ HYN++
Sbjct: 307 YIEILPTSQESKGVIFLSFWAEVHYNAI 334
>AT3G22260.2 | chr3:7871489-7873393 FORWARD LENGTH=246
Length = 245
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 253 KMAEDGNCLFRAVADQVYGDPEAYDMARQMCVDYMERERDHFSQFMTEGFTSYCRRKRRD 312
+M DGNC FRA+ADQ++ + + + R+ V ++++R + +++ + Y R+ ++
Sbjct: 105 QMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYRHYTRKMKKH 164
Query: 313 KVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQGSYNTDVPPIR---LSYHHGNHYNSV 369
+G+++ +QA A+ + I + + + I +N + P+R LS+ HYNS+
Sbjct: 165 GEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEILPHNKN--PLREAWLSFWSEVHYNSL 222
>AT3G02070.1 | chr3:361368-363132 FORWARD LENGTH=220
Length = 219
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 5/156 (3%)
Query: 225 CYASNYYDS--ERERMFEHDLRRVRGFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQM 282
CY N D+ + +R+ + V G K++ DGNC FRA++DQ+Y PE + R+
Sbjct: 55 CYIPNLNDATLDHQRLLQR--LNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRRE 112
Query: 283 CVDYMERERDHFSQFMTEGFTSYCRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPI 342
V ++ R + ++ + Y ++ + +G+++ +QA A+ + I + + +
Sbjct: 113 VVKQLKECRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAADRFAAKICLLTSFRDTC 172
Query: 343 NI-FQGSYNTDVPPIRLSYHHGNHYNSVVDPRGLTV 377
I Y + LS+ HYNS+ D + V
Sbjct: 173 FIEIIPQYQAPKGVLWLSFWSEVHYNSLYDIQAAPV 208
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,087,124
Number of extensions: 337705
Number of successful extensions: 766
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 7
Length of query: 550
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 446
Effective length of database: 8,255,305
Effective search space: 3681866030
Effective search space used: 3681866030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)