BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0414100 Os04g0414100|AK101471
(550 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0414100 Ovarian tumour, otubain domain containing protein 798 0.0
>Os04g0414100 Ovarian tumour, otubain domain containing protein
Length = 550
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/550 (76%), Positives = 418/550 (76%)
Query: 1 MTRIFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARXXXXXXXXXXXXXXXTASDNI 60
MTRIFV VAR TASDNI
Sbjct: 1 MTRIFVQRGAAGSSSSSSRSGSQTLQQQQQLQATSAVAREEELPPQPHQHPSELTASDNI 60
Query: 61 TDHLVEDADNSSNSNKPLGLDDPTXXXXXXXXXRAVMEKPPKDDSSVIDPAFLVEELTGL 120
TDHLVEDADNSSNSNKPLGLDDPT RAVMEKPPKDDSSVIDPAFLVEELTGL
Sbjct: 61 TDHLVEDADNSSNSNKPLGLDDPTSESSSSAEERAVMEKPPKDDSSVIDPAFLVEELTGL 120
Query: 121 QFSDQFEQENLVQSGIGPSQIAGXXXXXXXXXXXXXXXXXXXXGNNGLRRMGSGSSNNAR 180
QFSDQFEQENLVQSGIGPSQIAG GNNGLRRMGSGSSNNAR
Sbjct: 121 QFSDQFEQENLVQSGIGPSQIAGAASHPPPPPAPPAPPPKPSSGNNGLRRMGSGSSNNAR 180
Query: 181 IGSSRRPVAWXXXXXXXXXXXXXXXXXXXLADSEGYNSADEQGPCYASNYYDSERERMFE 240
IGSSRRPVAW LADSEGYNSADEQGPCYASNYYDSERERMFE
Sbjct: 181 IGSSRRPVAWPPVAVRSSASGSRPSSPRSLADSEGYNSADEQGPCYASNYYDSERERMFE 240
Query: 241 HDLRRVRGFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQMCVDYMERERDHFSQFMTE 300
HDLRRVRGFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQMCVDYMERERDHFSQFMTE
Sbjct: 241 HDLRRVRGFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQMCVDYMERERDHFSQFMTE 300
Query: 301 GFTSYCRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQGSYNTDVPPIRLSY 360
GFTSYCRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQGSYNTDVPPIRLSY
Sbjct: 301 GFTSYCRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQGSYNTDVPPIRLSY 360
Query: 361 HHGNHYNSVVDPRGLTVGAGLGFSSLRGTNNVDRXXXXXXXXXXXXXXXENALLAEGRLY 420
HHGNHYNSVVDPRGLTVGAGLGFSSLRGTNNVDR ENALLAEGRLY
Sbjct: 361 HHGNHYNSVVDPRGLTVGAGLGFSSLRGTNNVDRDQVKAAIKAQQDQQIENALLAEGRLY 420
Query: 421 SDLELTEKEIERMVMEASRAEYLKQQQQQLNFREXXXXXXXXXXXXXXXXXXXXXXXXDR 480
SDLELTEKEIERMVMEASRAEYLKQQQQQLNFRE DR
Sbjct: 421 SDLELTEKEIERMVMEASRAEYLKQQQQQLNFRESSTSGAEPSSSAAISGSSRSAGTADR 480
Query: 481 VGEECFVLPDTVLTRSMQLLLAMGFNYIQVMEAYSIFGEDVDSMIYYLVEMGGTGASAGG 540
VGEECFVLPDTVLTRSMQLLLAMGFNYIQVMEAYSIFGEDVDSMIYYLVEMGGTGASAGG
Sbjct: 481 VGEECFVLPDTVLTRSMQLLLAMGFNYIQVMEAYSIFGEDVDSMIYYLVEMGGTGASAGG 540
Query: 541 SNRRKGKAAE 550
SNRRKGKAAE
Sbjct: 541 SNRRKGKAAE 550
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,117,012
Number of extensions: 513675
Number of successful extensions: 1279
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1279
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 444
Effective length of database: 11,501,117
Effective search space: 5106495948
Effective search space used: 5106495948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)