Os04g0405600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1350 family protein.
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Os04g0405600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1350 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.39 | 0.291 | 10.6 | 0.0145 | 0.804 | -0.578 | 0.0446 | -0.0579 | 0.155 | 2.17 | 24.08 | 227 | -- | -- |
| 38.2 | 0.288 | 10.6 | 0.0242 | 0.791 | -0.572 | 0.0656 | -- | 0.162 | 2.19 | 24.1 | 199 | -- | -- |
| 38.18 | 0.288 | 10.6 | 0.0153 | 0.792 | -0.579 | -- | -0.0537 | 0.162 | 2.24 | 24.03 | 197 | -- | -- |
| 38.19 | 0.288 | 10.6 | 0.0357 | 0.791 | -0.582 | -- | -- | 0.168 | 2.24 | 24.04 | 197 | -- | -- |
| 61.82 | 0.366 | 10.6 | 0.0288 | -- | -0.786 | -- | -0.0345 | 0.202 | -- | 25.7 | 107 | -- | -- |
| 60.99 | 0.366 | 10.7 | -0.202 | 0.955 | -- | 0.0534 | -- | -0.0913 | 2.52 | -- | -- | -- | -- |
| 61 | 0.366 | 10.7 | -0.203 | 0.955 | -- | -- | -- | -0.0916 | 2.53 | -- | -- | -- | -- |
| 61.83 | 0.366 | 10.6 | 0.0406 | -- | -0.782 | -- | -- | 0.212 | -- | 25.71 | 107 | -- | -- |
| 38.22 | 0.288 | 10.6 | -- | 0.793 | -0.576 | -- | -- | 0.163 | 2.25 | 24.02 | 197 | -- | -- |
| 114.63 | 0.5 | 10.7 | -0.163 | -- | -- | -- | -- | -0.0678 | -- | -- | -- | -- | -- |
| 62.09 | 0.369 | 10.7 | -- | 0.952 | -- | -- | -- | -0.069 | 2.52 | -- | -- | -- | -- |
| 61.87 | 0.366 | 10.6 | -- | -- | -0.78 | -- | -- | 0.206 | -- | 25.72 | 107 | -- | -- |
| 115.33 | 0.501 | 10.7 | -- | -- | -- | -- | -- | -0.0498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.96 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 18 | 39.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 22 | 39.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 42 | 40.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 43 | 40.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 45 | 40.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 46 | 40.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 49 | 40.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 60 | 40.77 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 62 | 40.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 67 | 40.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 78 | 41.06 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 18 |
| 98 | 41.27 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 101 | 41.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 104 | 41.29 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 105 | 41.33 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 109 | 41.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 112 | 41.39 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |
| 133 | 41.56 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 135 | 41.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 141 | 41.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 146 | 41.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 204 | 42.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 280 | 42.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 283 | 42.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 311 | 42.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 341 | 42.96 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 361 | 43.05 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 429 | 43.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 450 | 43.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 455 | 43.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 473 | 43.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 488 | 43.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 507 | 43.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 13 |
| 533 | 43.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 547 | 43.87 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 599 | 43.97 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 653 | 44.15 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 22 |
| 674 | 44.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 681 | 44.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 695 | 44.25 | radiation | 1 | 1440 | < th | dose dependent | sin | 18 | NA |
| 756 | 44.41 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 763 | 44.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 792 | 44.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 814 | 44.55 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 822 | 44.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 840 | 44.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 862 | 44.64 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 872 | 44.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 874 | 44.66 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 23 |
| 900 | 44.70 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 23 |
| 919 | 44.74 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 938 | 44.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 955 | 44.80 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 23 |