BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0405600 Os04g0405600|AK068579
         (447 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47860.1  | chr5:19381656-19384310 FORWARD LENGTH=432          441   e-124
AT3G43540.1  | chr3:15430770-15433035 FORWARD LENGTH=374          107   1e-23

>AT5G47860.1 | chr5:19381656-19384310 FORWARD LENGTH=432
          Length = 431

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/357 (61%), Positives = 260/357 (72%)

Query: 88  IQLYSQIERVITEAAKQSREGWGSTGDWTEIEGAWVLKPKSQEPSXXXXXXXXXXXXAAP 147
           IQ+Y +IER++TE  K S+   G + DW+E+EGAWVLKP++ +P             AAP
Sbjct: 62  IQVYGEIERLLTETVKNSQSSSGGSSDWSEVEGAWVLKPRNSKPKMVVHFIGGIFVGAAP 121

Query: 148 QITYRFFLERLADKGALVIATPYASGFDHFFIADEVQFKFDRCLRNMVEPVNDLPTFGVG 207
           Q+TYR FLERLA+K  LVIATPYASGFDHF IADEVQFK+DRC R++ E V DLP+FG+G
Sbjct: 122 QLTYRLFLERLAEKDVLVIATPYASGFDHFNIADEVQFKYDRCCRSLQEEVQDLPSFGIG 181

Query: 208 HSLGSVIHLLIGSRYAVQRSGNILMAFNNKEASLAVPLFSPVIVPMAQSFGPIFSQLTSY 267
           HSLGSVIHLLIGSRYAVQR+GN+ MAFNNKEASLA+PLFSPV+VPMAQS GP+ SQ+ + 
Sbjct: 182 HSLGSVIHLLIGSRYAVQRNGNVFMAFNNKEASLAIPLFSPVLVPMAQSLGPLLSQVATS 241

Query: 268 PTLRFGAEAAIKQLENLSXXXXXXXXXXXXXXXXXYMDLVKGREEFVPKPEETRRLVKSY 327
           PT+R GAE   KQLE LS                 YMDLVKGRE+FVPKPEETRRL++SY
Sbjct: 242 PTIRLGAEMTRKQLETLSPPIMKQILPLVEQLPPLYMDLVKGREDFVPKPEETRRLIRSY 301

Query: 328 YGISRNLLIKFKDDQIDETSILAQVLSSESAISSLLDMSIRSLPGDHGXXXXXXXXXXXX 387
           YGISRNLLIKF+DD IDETSILAQVL  ES+ISS LDMSIR+LPGDHG            
Sbjct: 302 YGISRNLLIKFEDDSIDETSILAQVLGVESSISSKLDMSIRTLPGDHGLPLQQALPDVPP 361

Query: 388 AMADAVNRGGELLTNLATGTPWEAVAKEVGTGGAQYCTVLSANLQFSFTRNVHLVAT 444
            MA+AVNRG E L N+A GTPWE++AKEVG        +L A++     + V  + +
Sbjct: 362 GMAEAVNRGSEFLANIAVGTPWESMAKEVGGSLGMDSKILRADMSKDLAQLVDAITS 418



>AT3G43540.1 | chr3:15430770-15433035 FORWARD LENGTH=374
          Length = 373

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 21/229 (9%)

Query: 145 AAPQITYRFFLERLADKGALVIATPYASGFDHFFIADEVQFKFDRCLRNMVEP------- 197
           A P++TY +  E LA +G L+++ PY   FDH   A +V  +F+ CL  +V         
Sbjct: 76  AVPELTYSYLKELLAKEGYLIVSVPYNVTFDHEQAAKQVYERFNSCLDTIVSSGIPNSNL 135

Query: 198 ----VNDLPTFGVGHSLGSVIHLLIGSRYAVQRSG-NILMAFNNKEASLAVPLFSPVIVP 252
               + DLP F VGHS G+++ +L GS +A +    N +++FNNK A+ AVP F   + P
Sbjct: 136 KPGDLADLPLFSVGHSNGALLQVLTGSYFAEKIPKVNAIISFNNKSATEAVPYFEQ-LGP 194

Query: 253 MAQSFGPIFSQLTSYPTLRFGAEAAIKQLENLSXXXXXXXXXXXXXXXXXYMDLV----- 307
           + Q   P+      Y   R  +   +K L + +                  +D +     
Sbjct: 195 LIQQMLPMVEASPVYEMARNASGDVLKLLLDTAGTTILNNDQEALKSFTKLVDQLPSVFG 254

Query: 308 ---KGREEFVPKPEETRRLVKSYYGISRNLLIKFKDDQIDETSILAQVL 353
              +G  EF P P E R   K  Y +   LL++F  D IDET +L + L
Sbjct: 255 EVGQGVSEFRPSPLENRNCFKCSYSVPHTLLVQFNSDAIDETDLLEETL 303



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,808,005
Number of extensions: 273170
Number of successful extensions: 613
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 345
Effective length of database: 8,310,137
Effective search space: 2866997265
Effective search space used: 2866997265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)