BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0405600 Os04g0405600|AK068579
         (447 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0405600  Protein of unknown function DUF1350 family pro...   732   0.0  

>Os04g0405600 Protein of unknown function DUF1350 family protein
          Length = 447

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/447 (83%), Positives = 374/447 (83%)

Query: 1   MIRVVSPPPPSTVQLRXXXXXXXXXXXXAVCRFWGSRRGSRVAATXXXXXXXXXXXXXXX 60
           MIRVVSPPPPSTVQLR            AVCRFWGSRRGSRVAAT               
Sbjct: 1   MIRVVSPPPPSTVQLRGGGGTPGPSSSSAVCRFWGSRRGSRVAATSSWGWGKSRRRRRAA 60

Query: 61  XXXXXAEEGEGPRVATPSAPPAPSEGSIQLYSQIERVITEAAKQSREGWGSTGDWTEIEG 120
                AEEGEGPRVATPSAPPAPSEGSIQLYSQIERVITEAAKQSREGWGSTGDWTEIEG
Sbjct: 61  ISCCSAEEGEGPRVATPSAPPAPSEGSIQLYSQIERVITEAAKQSREGWGSTGDWTEIEG 120

Query: 121 AWVLKPKSQEPSXXXXXXXXXXXXAAPQITYRFFLERLADKGALVIATPYASGFDHFFIA 180
           AWVLKPKSQEPS            AAPQITYRFFLERLADKGALVIATPYASGFDHFFIA
Sbjct: 121 AWVLKPKSQEPSFVVHFVGGIFVGAAPQITYRFFLERLADKGALVIATPYASGFDHFFIA 180

Query: 181 DEVQFKFDRCLRNMVEPVNDLPTFGVGHSLGSVIHLLIGSRYAVQRSGNILMAFNNKEAS 240
           DEVQFKFDRCLRNMVEPVNDLPTFGVGHSLGSVIHLLIGSRYAVQRSGNILMAFNNKEAS
Sbjct: 181 DEVQFKFDRCLRNMVEPVNDLPTFGVGHSLGSVIHLLIGSRYAVQRSGNILMAFNNKEAS 240

Query: 241 LAVPLFSPVIVPMAQSFGPIFSQLTSYPTLRFGAEAAIKQLENLSXXXXXXXXXXXXXXX 300
           LAVPLFSPVIVPMAQSFGPIFSQLTSYPTLRFGAEAAIKQLENLS               
Sbjct: 241 LAVPLFSPVIVPMAQSFGPIFSQLTSYPTLRFGAEAAIKQLENLSPPVVKQLLPLVQQLP 300

Query: 301 XXYMDLVKGREEFVPKPEETRRLVKSYYGISRNLLIKFKDDQIDETSILAQVLSSESAIS 360
             YMDLVKGREEFVPKPEETRRLVKSYYGISRNLLIKFKDDQIDETSILAQVLSSESAIS
Sbjct: 301 PLYMDLVKGREEFVPKPEETRRLVKSYYGISRNLLIKFKDDQIDETSILAQVLSSESAIS 360

Query: 361 SLLDMSIRSLPGDHGXXXXXXXXXXXXAMADAVNRGGELLTNLATGTPWEAVAKEVGTGG 420
           SLLDMSIRSLPGDHG            AMADAVNRGGELLTNLATGTPWEAVAKEVGTGG
Sbjct: 361 SLLDMSIRSLPGDHGLPLQQVLPDVPPAMADAVNRGGELLTNLATGTPWEAVAKEVGTGG 420

Query: 421 AQYCTVLSANLQFSFTRNVHLVATEGL 447
           AQYCTVLSANLQFSFTRNVHLVATEGL
Sbjct: 421 AQYCTVLSANLQFSFTRNVHLVATEGL 447



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,885,597
Number of extensions: 463486
Number of successful extensions: 1352
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1350
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 343
Effective length of database: 11,605,545
Effective search space: 3980701935
Effective search space used: 3980701935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)