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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0403400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tyrosyl-DNA phosphodiesterase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.84 (0.0296) R2 : 0.445
β1 : -0.927 (0.108) R2dD : 0.0926 R2D : 0.0813
β2 : 1.33 (0.0771) R2dC : 0.364 R2C : 0.355
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.098 (0.0631) R2dN8 : 0.00393 R2N8 : -0.00672
σ : 0.556
deviance : 140.92
__
_____
C
peak time of C : 6.54
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.09 0.54 4.83 -0.861 1.36 -0.893 -0.00231 0.97 -0.0637 9.57 1.31 263 -- --
134.83 0.541 4.84 -0.882 1.4 -0.974 0.785 -- -0.0753 9.9 1.42 262 -- --
132.09 0.535 4.83 -0.861 1.36 -0.892 -- 0.969 -0.0638 9.56 1.309 262 -- --
137.01 0.545 4.83 -0.876 1.34 -0.842 -- -- -0.0663 9.46 1.43 260 -- --
140.45 0.552 4.8 -0.728 -- -1.53 -- 0.000352 0.103 -- 0.04171 768 -- --
140.91 0.556 4.84 -0.928 1.33 -- 0.0566 -- -0.0978 6.54 -- -- -- --
140.92 0.556 4.84 -0.927 1.33 -- -- -- -0.098 6.54 -- -- -- --
137.38 0.546 4.86 -0.805 -- -1.78 -- -- -0.0373 -- 0.9102 812 -- --
157.06 0.584 4.81 -- 1.3 -0.842 -- -- 0.0356 9.52 1.13 279 -- --
232.75 0.713 4.87 -0.894 -- -- -- -- -0.0706 -- -- -- -- --
163.57 0.598 4.82 -- 1.32 -- -- -- 0.00523 6.58 -- -- -- --
150.33 0.571 4.84 -- -- -1.94 -- -- 0.0584 -- 0.002599 822 -- --
253.85 0.744 4.85 -- -- -- -- -- 0.0286 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.18 radiation 1.0 270 < th dose dependent rect. 1 21
2 125.49 atmosphere 995.0 720 > th dose independent rect. 15 3
3 125.81 radiation 1.0 270 < th dose independent rect. 1 21
5 126.39 temperature 15.0 270 > th dose independent rect. 6 11
7 126.61 temperature 25.0 270 < th dose independent rect. 11 19
8 126.64 atmosphere 995.0 720 > th dose independent rect. 22 20
9 126.83 atmosphere 995.0 270 > th dose independent rect. 6 11
10 126.83 atmosphere 1015.0 270 < th dose dependent rect. 6 6
13 126.96 radiation 1.0 270 > th dose independent rect. 6 11
16 127.00 atmosphere 995.0 720 > th dose independent rect. 15 12
20 127.16 temperature 25.0 270 < th dose independent rect. 13 17
21 127.16 atmosphere 995.0 720 > th dose independent rect. 6 21
26 127.34 temperature 25.0 270 < th dose independent rect. 15 15
28 127.38 atmosphere 1010.0 270 < th dose dependent rect. 9 1
29 127.40 precipitation 0.1 270 < th dose independent rect. 6 11
30 127.40 precipitation 0.1 270 < th dose dependent rect. 6 11
31 127.41 humidity 60.0 720 > th dose independent rect. 18 4
35 127.48 atmosphere 1015.0 10 < th dose dependent rect. 19 13
37 127.50 wind 9.0 270 < th dose independent rect. 17 13
41 127.53 atmosphere 995.0 270 > th dose dependent rect. 22 4
43 127.54 atmosphere 1015.0 270 < th dose independent rect. 6 11
44 127.54 temperature 10.0 270 > th dose independent rect. 17 13
45 127.54 radiation 20.0 270 < th dose independent rect. 17 13
55 127.65 radiation 1.0 270 > th dose independent sin 1 NA
58 127.70 atmosphere 1010.0 10 < th dose dependent rect. 8 6
63 127.72 radiation 1.0 720 < th dose dependent rect. 16 6
70 127.80 radiation 10.0 720 < th dose independent rect. 3 3
76 127.86 radiation 1.0 720 < th dose independent rect. 15 7
78 127.87 humidity 50.0 270 > th dose independent rect. 17 13
83 127.90 radiation 1.0 720 > th dose independent rect. 15 19
87 127.94 radiation 40.0 270 < th dose dependent rect. 17 13
91 127.99 atmosphere 995.0 90 > th dose dependent rect. 15 13
98 128.03 atmosphere 1015.0 10 < th dose dependent rect. 8 11
102 128.07 atmosphere 995.0 720 > th dose independent rect. 15 19
105 128.10 atmosphere 995.0 720 > th dose independent rect. 15 10
107 128.10 wind 9.0 720 < th dose independent rect. 18 21
110 128.11 radiation 40.0 1440 < th dose dependent rect. 23 6
120 128.19 temperature 10.0 1440 > th dose independent rect. 23 6
123 128.19 temperature 30.0 1440 < th dose independent rect. 23 6
127 128.19 humidity 50.0 1440 > th dose independent rect. 23 6
136 128.19 atmosphere 995.0 1440 > th dose independent rect. 23 6
137 128.19 radiation 20.0 1440 < th dose independent rect. 23 6
149 128.19 temperature 10.0 1440 > th dose independent rect. 5 18
156 128.21 atmosphere 1015.0 270 < th dose dependent rect. 17 13
158 128.23 radiation 1.0 720 > th dose independent rect. 15 3
164 128.30 wind 7.0 720 < th dose independent rect. 3 3
168 128.31 temperature 20.0 720 > th dose independent rect. 15 3
174 128.33 atmosphere 995.0 270 > th dose dependent rect. 23 2
181 128.38 atmosphere 1000.0 270 > th dose independent rect. 22 4
193 128.49 temperature 20.0 30 > th dose independent rect. 24 14
204 128.55 temperature 10.0 30 > th dose dependent rect. 22 14
206 128.56 temperature 30.0 270 < th dose dependent rect. 3 2
209 128.58 radiation 20.0 720 < th dose dependent rect. 3 3
212 128.58 radiation 40.0 90 < th dose dependent rect. 13 15
213 128.59 wind 9.0 720 < th dose independent rect. 3 10
219 128.62 humidity 80.0 270 > th dose independent rect. 23 2
223 128.65 temperature 20.0 30 > th dose independent rect. 24 12
227 128.67 wind 9.0 720 < th dose independent rect. 1 14
228 128.67 radiation 1.0 720 < th dose independent rect. 8 14
230 128.68 radiation 10.0 90 < th dose independent rect. 8 20
238 128.73 humidity 80.0 270 > th dose independent rect. 22 4
241 128.73 radiation 1.0 720 < th dose dependent rect. 8 14
252 128.77 wind 9.0 270 < th dose independent rect. 6 11
253 128.77 radiation 40.0 270 < th dose independent rect. 13 13
256 128.80 wind 1.0 270 > th dose independent rect. 3 2
257 128.80 temperature 10.0 720 > th dose independent rect. 15 3
258 128.80 atmosphere 1015.0 720 < th dose independent rect. 15 3
259 128.80 temperature 10.0 720 > th dose independent rect. 18 21
261 128.81 atmosphere 1000.0 270 > th dose independent rect. 23 2
266 128.83 wind 1.0 720 > th dose independent rect. 15 3
267 128.83 humidity 50.0 14400 > th dose independent rect. 5 4
270 128.84 precipitation 0.1 270 < th dose independent rect. 17 13
272 128.84 precipitation 0.1 270 < th dose dependent rect. 17 13
274 128.85 temperature 10.0 720 > th dose independent rect. 3 3
275 128.85 temperature 30.0 720 < th dose independent rect. 3 3
276 128.85 humidity 50.0 720 > th dose independent rect. 3 3
279 128.85 atmosphere 995.0 720 > th dose independent rect. 3 3
283 128.85 temperature 10.0 720 > th dose independent rect. 6 21
284 128.85 radiation 1.0 10 < th dose dependent rect. 4 3
288 128.88 wind 1.0 10 > th dose independent rect. 12 19
303 128.94 radiation 20.0 90 < th dose dependent rect. 8 20
304 128.95 atmosphere 995.0 30 > th dose dependent rect. 22 7
308 128.97 wind 1.0 10 > th dose independent rect. 19 13
312 128.98 temperature 15.0 720 > th dose independent rect. 6 4
325 129.03 atmosphere 1005.0 90 < th dose independent rect. 9 4
328 129.06 atmosphere 995.0 4320 > th dose independent rect. 1 4
330 129.06 temperature 10.0 90 > th dose dependent rect. 8 19
345 129.11 wind 7.0 30 < th dose independent rect. 5 17
364 129.13 wind 1.0 10 > th dose independent rect. 14 18
366 129.15 wind 9.0 720 < th dose independent rect. 15 3
367 129.15 radiation 10.0 90 < th dose independent rect. 11 17
368 129.15 radiation 1.0 10 < th dose dependent rect. 4 10
371 129.16 atmosphere 1005.0 90 < th dose independent rect. 9 6
378 129.17 temperature 20.0 270 > th dose independent rect. 22 14
379 129.17 atmosphere 995.0 720 > th dose independent rect. 13 14
386 129.20 temperature 30.0 720 < th dose independent rect. 18 4
388 129.20 wind 9.0 30 < th dose dependent rect. 22 7
394 129.22 radiation 1.0 720 > th dose independent rect. 15 21
408 129.26 wind 9.0 1440 < th dose independent rect. 5 4
412 129.26 humidity 50.0 1440 > th dose independent rect. 5 4
414 129.26 atmosphere 995.0 1440 > th dose independent rect. 5 4
415 129.26 atmosphere 1015.0 1440 < th dose independent rect. 5 4
416 129.26 temperature 20.0 30 > th dose independent rect. 22 14
417 129.26 temperature 10.0 1440 > th dose independent rect. 9 20
426 129.28 temperature 25.0 720 < th dose independent rect. 15 7
427 129.28 temperature 10.0 720 > th dose independent rect. 3 10
428 129.28 atmosphere 995.0 720 > th dose independent rect. 3 10
429 129.28 temperature 10.0 720 > th dose independent rect. 13 14
446 129.31 atmosphere 1000.0 30 > th dose independent rect. 22 7
449 129.31 wind 9.0 270 < th dose independent rect. 2 20
450 129.31 precipitation 0.1 270 < th dose independent rect. 5 22
452 129.31 precipitation 0.1 270 < th dose dependent rect. 5 22
462 129.35 temperature 25.0 720 < th dose independent rect. 15 5
464 129.35 temperature 20.0 30 > th dose independent rect. 22 16
468 129.36 temperature 25.0 720 < th dose independent rect. 11 11
488 129.41 temperature 10.0 720 > th dose independent rect. 15 10
489 129.41 temperature 10.0 720 > th dose independent rect. 1 14
491 129.41 radiation 40.0 30 < th dose independent rect. 5 17
497 129.42 wind 5.0 30 < th dose independent rect. 22 7
498 129.42 humidity 80.0 30 > th dose independent rect. 22 7
512 129.45 radiation 1.0 720 > th dose independent rect. 15 14
519 129.47 temperature 20.0 270 > th dose independent rect. 8 2
528 129.48 wind 9.0 270 < th dose independent rect. 1 22
571 129.53 temperature 10.0 270 > th dose dependent rect. 22 4
590 129.55 atmosphere 1015.0 270 < th dose independent rect. 2 20
608 129.59 wind 1.0 30 > th dose independent rect. 4 4
629 129.62 atmosphere 1015.0 270 < th dose independent rect. 3 3
633 129.62 precipitation 0.1 270 < th dose independent rect. 22 4
634 129.62 temperature 20.0 10 > th dose independent rect. 9 5
638 129.62 precipitation 0.1 270 < th dose dependent rect. 22 4
640 129.63 wind 9.0 720 < th dose independent rect. 3 12
644 129.64 precipitation 0.1 270 < th dose independent rect. 3 3
649 129.64 precipitation 0.1 270 < th dose dependent rect. 3 3
684 129.68 wind 9.0 270 < th dose independent rect. 22 4
685 129.68 temperature 10.0 270 > th dose independent rect. 22 4
686 129.68 temperature 30.0 270 < th dose independent rect. 22 4
687 129.68 humidity 50.0 270 > th dose independent rect. 22 4
691 129.68 radiation 1.0 270 < th dose independent rect. 22 4
696 129.68 wind 1.0 270 > th dose independent rect. 6 11
697 129.68 temperature 15.0 90 > th dose independent rect. 19 13
698 129.68 radiation 20.0 90 < th dose independent rect. 19 13
699 129.68 temperature 10.0 270 > th dose independent rect. 2 20
704 129.68 radiation 1.0 270 < th dose dependent rect. 22 4
718 129.69 atmosphere 1015.0 720 < th dose dependent rect. 19 3
738 129.74 atmosphere 1015.0 270 < th dose dependent rect. 3 2
748 129.76 temperature 20.0 30 > th dose independent rect. 9 3
752 129.76 temperature 15.0 30 > th dose dependent rect. 24 12
753 129.77 temperature 25.0 720 < th dose independent sin 17 NA
756 129.77 temperature 20.0 270 > th dose independent rect. 6 6
763 129.78 wind 1.0 30 > th dose independent rect. 4 18
771 129.81 wind 9.0 720 < th dose independent rect. 18 4
775 129.81 atmosphere 995.0 720 > th dose dependent rect. 15 3
785 129.84 temperature 10.0 720 > th dose independent rect. 18 4
787 129.84 radiation 20.0 720 < th dose independent rect. 18 4
790 129.84 radiation 40.0 90 < th dose independent rect. 19 13
791 129.84 temperature 10.0 720 > th dose independent rect. 22 20
798 129.85 wind 9.0 90 < th dose independent rect. 19 13
808 129.86 humidity 50.0 90 > th dose independent rect. 19 13
810 129.86 atmosphere 995.0 90 > th dose independent rect. 19 13
816 129.87 precipitation 0.1 720 < th dose independent rect. 6 4
819 129.87 radiation 40.0 720 < th dose dependent rect. 18 4
820 129.87 precipitation 0.1 720 < th dose dependent rect. 6 4
837 129.90 temperature 10.0 30 > th dose independent rect. 22 7
838 129.90 temperature 30.0 30 < th dose independent rect. 22 7
839 129.90 humidity 50.0 30 > th dose independent rect. 22 7
843 129.90 radiation 1.0 30 < th dose independent rect. 22 7
848 129.90 temperature 10.0 30 > th dose independent rect. 5 17
850 129.90 atmosphere 1015.0 30 < th dose independent rect. 5 17
854 129.90 radiation 1.0 30 < th dose dependent rect. 22 21
856 129.91 radiation 40.0 720 < th dose independent rect. 15 3
858 129.91 wind 9.0 270 < th dose independent rect. 11 11
860 129.91 atmosphere 995.0 270 > th dose independent rect. 17 13
864 129.91 radiation 10.0 30 < th dose dependent rect. 22 7
871 129.92 wind 1.0 270 > th dose independent rect. 22 4
895 129.95 radiation 1.0 270 < th dose dependent rect. 3 10
898 129.96 precipitation 0.1 30 < th dose independent rect. 22 7
900 129.96 atmosphere 1000.0 90 > th dose independent rect. 8 19
904 129.96 precipitation 0.1 30 < th dose dependent rect. 22 7
937 129.97 temperature 10.0 90 > th dose dependent rect. 22 6
945 130.00 precipitation 0.1 270 < th dose independent rect. 23 2
948 130.00 precipitation 0.1 270 < th dose dependent rect. 23 2
950 130.01 wind 9.0 270 < th dose independent rect. 23 2
951 130.01 temperature 10.0 270 > th dose independent rect. 23 2
952 130.01 temperature 30.0 270 < th dose independent rect. 23 2
953 130.01 humidity 50.0 270 > th dose independent rect. 23 2
957 130.01 radiation 1.0 270 < th dose independent rect. 23 2
966 130.01 temperature 10.0 270 > th dose independent rect. 1 22
967 130.01 radiation 1.0 270 < th dose dependent rect. 23 2