BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0403400 Os04g0403400|AK120071
         (1011 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07400.1  | chr5:2340814-2345321 FORWARD LENGTH=1085           697   0.0  
AT5G15170.1  | chr5:4926300-4929307 REVERSE LENGTH=606             54   5e-07

>AT5G07400.1 | chr5:2340814-2345321 FORWARD LENGTH=1085
          Length = 1084

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/670 (52%), Positives = 452/670 (67%), Gaps = 19/670 (2%)

Query: 282  GSTFFLNRLIGIGSDMRVEQRSGVTLPQLLHPMDSLERVFIATFTSDVSWFLDYCKVPQN 341
            G  F+LNRL  I       QR  V+LP+LLHP++S++++F+ATFTSD+ WFL  C  P++
Sbjct: 363  GKNFYLNRLQYIEQSSTGCQRV-VSLPELLHPVESIQQIFLATFTSDILWFLTCCDTPRH 421

Query: 342  LPVTIACHNKERCWSASRESRTAAPFGSYPNLLLVYPQFPEEIAFGKDRKKQGVACHHPK 401
            LPVTIACHN ERCWS++ ++RTA P  +YPN+ +VYP FPEEIAFGKDR  +G+ACHHPK
Sbjct: 422  LPVTIACHNAERCWSSNPDARTAVPLPNYPNVTMVYPPFPEEIAFGKDRTNRGIACHHPK 481

Query: 402  LLVLQRKDSMRVIVTSANLVPRQWHLITNTVWWQDFPCRTSTDYSALFSKVEES-----K 456
            L +LQRKDS+RVI+TSANLV RQW+ +TNTVWWQDFP R   D  +LF   +       K
Sbjct: 482  LFILQRKDSIRVIITSANLVARQWNDVTNTVWWQDFPRRADPDLLSLFGHCQRETNHGLK 541

Query: 457  SDFATQLVSFIAFLINEVPSQSYWINEIAKYNFEGAAGYLIASVPGIYARNPHYLESNYC 516
             DF  QL  F A L+ +VPSQ++WI E  KYNFE +AG+L+ASVPGI++  P YL  + C
Sbjct: 542  PDFCAQLAGFAASLLTDVPSQAHWILEFTKYNFEHSAGHLVASVPGIHSYKPSYLTESGC 601

Query: 517  LSRKQILHTKSAHRMFLGSVQTSVVGLSHRFHIPSDA-GXXXXXXXXXXXXCHVNMHGTT 575
                 I   +     FLGSV+ SVVGLS+ F   +D+ G               N  G  
Sbjct: 602  --SNTIFSEE-----FLGSVEASVVGLSYLFRSANDSTGAQLKRLASYIRRTRENSLGML 654

Query: 576  EVILKRNTNIPADANAVSVLVADLDKFTEEDSVHLGFLPREVAKWVSPLSDLGFFTFSGF 635
            E++L+RNTN+PAD NAV VLV + D  + +D V LGFLPR +AKWVSPL D+GFF F G+
Sbjct: 655  ELVLRRNTNVPADPNAVRVLVPNPDDDSRDDFVQLGFLPRSIAKWVSPLWDIGFFKFVGY 714

Query: 636  IYPREALEAAYGATNTKVQLLLYVSKGPEFSQISRLIQDEHFPLLCSLVASLKRSLGLWR 695
            +Y  E L AA   +N KVQL+L+V +G   S +S+LIQ  H   LCSL+ASL+R  G+WR
Sbjct: 715  VYRDEVLGAASCRSNEKVQLVLHVLQGVSISDMSKLIQPYHVVALCSLIASLQRCTGIWR 774

Query: 696  LEEVLSHFKWPETLETDFFYSASSIGTSINPQFIASFASAAGKRCNQDLDSEESDPEWGC 755
            L+EVL  +KWPE+ E+DF YSASSIG S    F A F+SAAGK+  Q  DS+ESDPEWGC
Sbjct: 775  LQEVLGRYKWPESQESDFVYSASSIGGSATTGFQADFSSAAGKKALQHFDSQESDPEWGC 834

Query: 756  WTANHELKKPSINLLFPTIDRVKNGACGIQLSRHLLSLPERTWQRLRSTGIFRDAIPHPY 815
            W+   E + PSI ++FPTI+RVKNG  G+  SR LL   E+TWQ+ R + +  DA+P+P 
Sbjct: 835  WSNREEREAPSIKIIFPTIERVKNGHHGVLSSRRLLCFSEKTWQKWRHSNVLHDAVPNPQ 894

Query: 816  ERIGHPMHVKVAQRRF--ESRLGRHSFGWTYCGSHNFSPAAWGQQLPPPKANPTEA--RA 871
            +R+GHPMH+KVA+R F         SFGW Y GSHNFS AAWGQ +     N  +    A
Sbjct: 895  DRVGHPMHIKVARRLFTSTRGSRSSSFGWVYSGSHNFSAAAWGQTISRSSRNNQDQSNNA 954

Query: 872  VSSGPRLHICNYELGIILIIPPSAMSKQISGRRHEINDIVLPFVVPPPQYKLGDRPATSL 931
            + +  +L +CNYELGI+ + PP    +  S    +I+DIVLPFVVP P+Y   D+PAT L
Sbjct: 955  IRAVKKLRVCNYELGIVFVFPP-PHEETDSCEGSKIDDIVLPFVVPAPKYGWSDKPATGL 1013

Query: 932  AMREAMAEAR 941
            AMREA AE R
Sbjct: 1014 AMREAFAEFR 1023



>AT5G15170.1 | chr5:4926300-4929307 REVERSE LENGTH=606
          Length = 605

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 20/187 (10%)

Query: 321 FIATFTSDVSWFLDYCKVPQNLPVTIACHNKERCWSASRESRTAAPFGSYPNLLLVYPQF 380
            ++ +  D+ W +  C    N+P  +  H +        + +  A      N +L  P+ 
Sbjct: 175 ILSNYMVDIDWLMSACPKLANIPQVMVIHGEGDGRQEYIQRKKPA------NWILHKPRL 228

Query: 381 PEEIAFGKDRKKQGVACHHPKLLVLQRKDSMRVIVTSANLVPRQWHLITNTVWWQDFPCR 440
           P  I+FG          HH K + L     +RV+V +ANL+   W+  +  +W QDFP +
Sbjct: 229 P--ISFG---------THHSKAIFLVYPRGVRVVVHTANLIHVDWNNKSQGLWMQDFPWK 277

Query: 441 TSTDYSALFSKVEESKSDFATQLVSFIAFLINEVPSQSYWINE--IAKYNFEGAAGYLIA 498
                       E    D+   ++ +  F  N     +  IN     K+++  A   LIA
Sbjct: 278 DDDKDPPKGCGFEGDLIDY-LNVLKWPEFTANLPGRGNVKINAAFFKKFDYSDATVRLIA 336

Query: 499 SVPGIYA 505
           SVPG + 
Sbjct: 337 SVPGYHT 343



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,776,687
Number of extensions: 853132
Number of successful extensions: 1815
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 2
Length of query: 1011
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 903
Effective length of database: 8,145,641
Effective search space: 7355513823
Effective search space used: 7355513823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)