BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0403400 Os04g0403400|AK120071
         (1011 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0403400  Tyrosyl-DNA phosphodiesterase family protein       1873   0.0  

>Os04g0403400 Tyrosyl-DNA phosphodiesterase family protein
          Length = 1011

 Score = 1873 bits (4852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 917/1011 (90%), Positives = 917/1011 (90%)

Query: 1    MEAEPPPENRHDDHHPSTSGGGLGYFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
            MEAEPPPENRHDDHHPSTSGGGLGYFH                                 
Sbjct: 1    MEAEPPPENRHDDHHPSTSGGGLGYFHLRLLCPAAPLLLLLRSDRLYSLSLSRRRGPRLR 60

Query: 61   XXXXXXXXXXXXXXXXXXSTSGCALRLTHRSSSADAVRVNGRPLLRGGCPADLAVGDEVS 120
                              STSGCALRLTHRSSSADAVRVNGRPLLRGGCPADLAVGDEVS
Sbjct: 61   LLASPRRRHGRRRRALLLSTSGCALRLTHRSSSADAVRVNGRPLLRGGCPADLAVGDEVS 120

Query: 121  LLRRGTRYGFLVEKFVSCERPKLAAAEPCGEVLVLRAESLRKRLRAISESHDPLSFLRDS 180
            LLRRGTRYGFLVEKFVSCERPKLAAAEPCGEVLVLRAESLRKRLRAISESHDPLSFLRDS
Sbjct: 121  LLRRGTRYGFLVEKFVSCERPKLAAAEPCGEVLVLRAESLRKRLRAISESHDPLSFLRDS 180

Query: 181  HCVENGSDDVRVKKAREEDVFLPLNLNAPIDPVAVEGLLREDCNLGQGKLEHCTDSAIAK 240
            HCVENGSDDVRVKKAREEDVFLPLNLNAPIDPVAVEGLLREDCNLGQGKLEHCTDSAIAK
Sbjct: 181  HCVENGSDDVRVKKAREEDVFLPLNLNAPIDPVAVEGLLREDCNLGQGKLEHCTDSAIAK 240

Query: 241  NETDELIQRSKGSCDGNTEQKEYSXXXXXXXXXXXXGCYSDGSTFFLNRLIGIGSDMRVE 300
            NETDELIQRSKGSCDGNTEQKEYS            GCYSDGSTFFLNRLIGIGSDMRVE
Sbjct: 241  NETDELIQRSKGSCDGNTEQKEYSNENTEQQHNENEGCYSDGSTFFLNRLIGIGSDMRVE 300

Query: 301  QRSGVTLPQLLHPMDSLERVFIATFTSDVSWFLDYCKVPQNLPVTIACHNKERCWSASRE 360
            QRSGVTLPQLLHPMDSLERVFIATFTSDVSWFLDYCKVPQNLPVTIACHNKERCWSASRE
Sbjct: 301  QRSGVTLPQLLHPMDSLERVFIATFTSDVSWFLDYCKVPQNLPVTIACHNKERCWSASRE 360

Query: 361  SRTAAPFGSYPNLLLVYPQFPEEIAFGKDRKKQGVACHHPKLLVLQRKDSMRVIVTSANL 420
            SRTAAPFGSYPNLLLVYPQFPEEIAFGKDRKKQGVACHHPKLLVLQRKDSMRVIVTSANL
Sbjct: 361  SRTAAPFGSYPNLLLVYPQFPEEIAFGKDRKKQGVACHHPKLLVLQRKDSMRVIVTSANL 420

Query: 421  VPRQWHLITNTVWWQDFPCRTSTDYSALFSKVEESKSDFATQLVSFIAFLINEVPSQSYW 480
            VPRQWHLITNTVWWQDFPCRTSTDYSALFSKVEESKSDFATQLVSFIAFLINEVPSQSYW
Sbjct: 421  VPRQWHLITNTVWWQDFPCRTSTDYSALFSKVEESKSDFATQLVSFIAFLINEVPSQSYW 480

Query: 481  INEIAKYNFEGAAGYLIASVPGIYARNPHYLESNYCLSRKQILHTKSAHRMFLGSVQTSV 540
            INEIAKYNFEGAAGYLIASVPGIYARNPHYLESNYCLSRKQILHTKSAHRMFLGSVQTSV
Sbjct: 481  INEIAKYNFEGAAGYLIASVPGIYARNPHYLESNYCLSRKQILHTKSAHRMFLGSVQTSV 540

Query: 541  VGLSHRFHIPSDAGXXXXXXXXXXXXCHVNMHGTTEVILKRNTNIPADANAVSVLVADLD 600
            VGLSHRFHIPSDAG            CHVNMHGTTEVILKRNTNIPADANAVSVLVADLD
Sbjct: 541  VGLSHRFHIPSDAGSKLKALSVLLSKCHVNMHGTTEVILKRNTNIPADANAVSVLVADLD 600

Query: 601  KFTEEDSVHLGFLPREVAKWVSPLSDLGFFTFSGFIYPREALEAAYGATNTKVQLLLYVS 660
            KFTEEDSVHLGFLPREVAKWVSPLSDLGFFTFSGFIYPREALEAAYGATNTKVQLLLYVS
Sbjct: 601  KFTEEDSVHLGFLPREVAKWVSPLSDLGFFTFSGFIYPREALEAAYGATNTKVQLLLYVS 660

Query: 661  KGPEFSQISRLIQDEHFPLLCSLVASLKRSLGLWRLEEVLSHFKWPETLETDFFYSASSI 720
            KGPEFSQISRLIQDEHFPLLCSLVASLKRSLGLWRLEEVLSHFKWPETLETDFFYSASSI
Sbjct: 661  KGPEFSQISRLIQDEHFPLLCSLVASLKRSLGLWRLEEVLSHFKWPETLETDFFYSASSI 720

Query: 721  GTSINPQFIASFASAAGKRCNQDLDSEESDPEWGCWTANHELKKPSINLLFPTIDRVKNG 780
            GTSINPQFIASFASAAGKRCNQDLDSEESDPEWGCWTANHELKKPSINLLFPTIDRVKNG
Sbjct: 721  GTSINPQFIASFASAAGKRCNQDLDSEESDPEWGCWTANHELKKPSINLLFPTIDRVKNG 780

Query: 781  ACGIQLSRHLLSLPERTWQRLRSTGIFRDAIPHPYERIGHPMHVKVAQRRFESRLGRHSF 840
            ACGIQLSRHLLSLPERTWQRLRSTGIFRDAIPHPYERIGHPMHVKVAQRRFESRLGRHSF
Sbjct: 781  ACGIQLSRHLLSLPERTWQRLRSTGIFRDAIPHPYERIGHPMHVKVAQRRFESRLGRHSF 840

Query: 841  GWTYCGSHNFSPAAWGQQLPPPKANPTEARAVSSGPRLHICNYELGIILIIPPSAMSKQI 900
            GWTYCGSHNFSPAAWGQQLPPPKANPTEARAVSSGPRLHICNYELGIILIIPPSAMSKQI
Sbjct: 841  GWTYCGSHNFSPAAWGQQLPPPKANPTEARAVSSGPRLHICNYELGIILIIPPSAMSKQI 900

Query: 901  SGRRHEINDIVLPFVVPPPQYKLGDRPATSLAMREAMAEARILQSNDLVLDLSQXXXXXX 960
            SGRRHEINDIVLPFVVPPPQYKLGDRPATSLAMREAMAEARILQSNDLVLDLSQ      
Sbjct: 901  SGRRHEINDIVLPFVVPPPQYKLGDRPATSLAMREAMAEARILQSNDLVLDLSQDTDEDI 960

Query: 961  XXXXXXHVIELSDCSPXXXXXXXIYAETLWEQVDSSQRPGWPVKLKSRCFG 1011
                  HVIELSDCSP       IYAETLWEQVDSSQRPGWPVKLKSRCFG
Sbjct: 961  PDEDDEHVIELSDCSPEEKEEEKIYAETLWEQVDSSQRPGWPVKLKSRCFG 1011



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 33,099,561
Number of extensions: 1353109
Number of successful extensions: 2960
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2960
Number of HSP's successfully gapped: 2
Length of query: 1011
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 900
Effective length of database: 11,240,047
Effective search space: 10116042300
Effective search space used: 10116042300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)