FiT-DB / Search/ Help/ Sample detail

Os04g0398300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glycyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0103) R2 : 0.707
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.825 (0.0249) R2dC : 0.71 R2C : 0.706
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0208 (0.0217) R2dN8 : 0.000763 R2N8 : -0.00287
σ : 0.195
deviance : 17.34
__
_____
C
peak time of C : 22.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.34 0.178 13.4 -0.175 0.51 0.312 -0.22 0.141 -0.0337 21.4 0.11 46 -- --
14.41 0.177 13.4 -0.166 0.496 0.312 -0.129 -- -0.0383 21.5 0.009973 39 -- --
14.5 0.177 13.4 -0.173 0.496 0.322 -- 0.115 -0.0369 21.3 0.09127 46 -- --
14.4 0.177 13.4 -0.162 0.505 0.314 -- -- -0.0349 21.5 0.007843 44 -- --
20.87 0.213 13.4 -0.115 -- 0.592 -- -0.0884 -0.0219 -- 0.04 35 -- --
16.29 0.189 13.4 -0.2 0.826 -- -0.0187 -- -0.043 22.5 -- -- -- --
16.29 0.189 13.4 -0.199 0.826 -- -- -- -0.043 22.5 -- -- -- --
20.66 0.212 13.4 -0.136 -- 0.589 -- -- -0.0407 -- 0.04 29 -- --
15.09 0.181 13.4 -- 0.502 0.317 -- -- -0.019 21.6 1.119e-06 43 -- --
58.2 0.356 13.4 -0.184 -- -- -- -- -0.0393 -- -- -- -- --
17.34 0.195 13.4 -- 0.825 -- -- -- -0.0208 22.5 -- -- -- --
20.92 0.213 13.4 -- -- 0.606 -- -- -0.00676 -- 0.04 23 -- --
59.09 0.359 13.4 -- -- -- -- -- -0.0189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.39 radiation 10.0 30 < th dose dependent sin 12 NA
2 13.43 radiation 1.0 90 < th dose independent sin 12 NA
10 13.60 radiation 1.0 90 > th dose independent sin 12 NA
19 13.72 precipitation 0.1 270 < th dose independent rect. 3 14
20 13.72 precipitation 0.1 270 < th dose dependent rect. 3 14
21 13.74 radiation 1.0 90 > th dose independent rect. 15 16
27 13.78 radiation 1.0 270 < th dose dependent rect. 5 22
28 13.79 wind 5.0 270 < th dose independent rect. 18 9
39 13.87 precipitation 0.1 270 < th dose independent rect. 17 10
42 13.87 precipitation 0.1 270 < th dose dependent rect. 17 10
47 13.89 atmosphere 995.0 270 > th dose independent rect. 12 9
48 13.89 atmosphere 995.0 270 > th dose independent rect. 3 14
51 13.92 temperature 10.0 270 > th dose dependent rect. 21 15
58 13.95 temperature 15.0 270 > th dose independent rect. 3 14
62 13.96 temperature 15.0 270 > th dose independent rect. 12 9
63 13.96 temperature 10.0 270 > th dose dependent rect. 18 8
70 13.99 wind 5.0 270 < th dose independent rect. 3 4
71 13.99 atmosphere 1005.0 270 > th dose independent rect. 3 4
72 13.99 atmosphere 1010.0 270 < th dose independent rect. 12 9
73 13.99 temperature 10.0 270 > th dose independent rect. 17 10
74 13.99 radiation 20.0 270 < th dose independent rect. 17 10
78 13.99 atmosphere 1015.0 270 < th dose independent rect. 3 14
79 13.99 radiation 1.0 270 < th dose independent rect. 6 21
83 14.00 wind 7.0 270 < th dose independent rect. 21 15
85 14.00 radiation 1.0 90 < th dose independent rect. 5 23
86 14.00 radiation 40.0 270 < th dose dependent rect. 17 10
91 14.01 temperature 10.0 270 > th dose independent rect. 21 15
92 14.01 atmosphere 995.0 270 > th dose independent rect. 21 15
100 14.02 atmosphere 995.0 270 > th dose dependent rect. 3 4
104 14.03 humidity 50.0 270 > th dose independent rect. 17 10
108 14.04 precipitation 0.1 270 < th dose independent rect. 3 4
110 14.04 humidity 50.0 270 > th dose independent rect. 21 15
112 14.04 precipitation 0.1 270 < th dose dependent rect. 3 4
126 14.05 wind 9.0 270 < th dose dependent rect. 3 4
146 14.08 precipitation 0.1 270 < th dose independent rect. 12 9
149 14.08 atmosphere 995.0 270 > th dose independent rect. 13 18
154 14.08 precipitation 0.1 270 < th dose dependent rect. 12 9
158 14.09 wind 9.0 270 < th dose dependent rect. 17 9
161 14.09 radiation 1.0 270 < th dose dependent rect. 9 18
163 14.10 atmosphere 1005.0 10 > th dose independent rect. 5 4
165 14.10 wind 9.0 270 < th dose independent rect. 3 14
170 14.10 humidity 50.0 90 > th dose dependent rect. 9 19
171 14.11 wind 9.0 270 < th dose independent rect. 12 9
172 14.11 atmosphere 995.0 270 > th dose independent rect. 18 9
174 14.11 wind 9.0 270 < th dose independent rect. 7 20
177 14.12 radiation 1.0 90 > th dose independent rect. 4 3
199 14.13 humidity 50.0 270 > th dose independent rect. 7 6
203 14.13 humidity 50.0 270 > th dose independent rect. 7 20
205 14.13 wind 5.0 10 < th dose dependent rect. 5 4
206 14.13 temperature 10.0 270 > th dose dependent rect. 3 4
208 14.13 radiation 1.0 270 < th dose dependent rect. 14 13
223 14.15 precipitation 0.1 270 < th dose independent rect. 7 20
228 14.15 precipitation 0.1 270 < th dose dependent rect. 7 20
232 14.16 temperature 10.0 270 > th dose independent rect. 3 4
234 14.16 temperature 30.0 270 < th dose independent rect. 3 4
235 14.16 humidity 50.0 270 > th dose independent rect. 3 4
237 14.16 atmosphere 995.0 270 > th dose independent rect. 3 4
238 14.16 atmosphere 1015.0 270 < th dose independent rect. 3 4
239 14.16 radiation 30.0 270 < th dose independent rect. 3 4
244 14.16 precipitation 0.1 270 < th dose independent rect. 21 15
246 14.16 temperature 15.0 270 > th dose independent rect. 13 18
247 14.16 temperature 10.0 270 > th dose independent rect. 7 20
253 14.16 precipitation 0.1 270 < th dose dependent rect. 21 15
281 14.18 wind 1.0 270 > th dose independent rect. 12 9
288 14.18 atmosphere 1005.0 10 > th dose dependent rect. 5 3
290 14.18 temperature 10.0 90 > th dose dependent rect. 21 7
296 14.19 wind 5.0 90 < th dose independent rect. 21 7
297 14.19 precipitation 0.1 270 < th dose independent rect. 13 18
301 14.19 radiation 1.0 90 > th dose dependent rect. 4 3
303 14.19 radiation 40.0 270 < th dose dependent rect. 3 4
313 14.19 precipitation 0.1 270 < th dose dependent rect. 13 18
314 14.19 humidity 50.0 270 > th dose dependent rect. 7 19
318 14.20 temperature 10.0 270 > th dose independent rect. 7 6
319 14.20 atmosphere 995.0 270 > th dose independent rect. 7 6
320 14.20 atmosphere 1015.0 270 < th dose independent rect. 7 6
334 14.21 wind 9.0 270 < th dose independent rect. 7 6
335 14.21 precipitation 0.1 270 < th dose independent rect. 7 6
342 14.21 precipitation 0.1 270 < th dose dependent rect. 7 6
348 14.22 atmosphere 1000.0 10 > th dose independent rect. 13 9
358 14.22 atmosphere 995.0 270 > th dose dependent rect. 12 8
370 14.23 atmosphere 1005.0 90 > th dose dependent rect. 5 3
384 14.24 radiation 1.0 270 < th dose independent rect. 14 13
405 14.25 temperature 25.0 270 < th dose independent rect. 23 8
434 14.26 temperature 20.0 10 > th dose dependent rect. 5 2
442 14.27 wind 3.0 10 < th dose independent rect. 5 4
456 14.27 wind 9.0 270 < th dose independent rect. 13 18
467 14.27 radiation 1.0 90 < th dose dependent rect. 21 22
473 14.28 temperature 30.0 270 < th dose independent rect. 18 9
482 14.28 humidity 50.0 270 > th dose dependent rect. 7 6
518 14.29 radiation 1.0 30 < th dose dependent rect. 18 23
544 14.30 humidity 50.0 270 > th dose dependent rect. 3 4
571 14.31 humidity 50.0 90 > th dose independent rect. 9 19
609 14.33 wind 1.0 270 > th dose independent rect. 7 6
616 14.33 wind 1.0 270 > th dose independent rect. 7 19
620 14.33 temperature 15.0 270 > th dose dependent rect. 21 4
624 14.33 humidity 50.0 90 > th dose dependent rect. 18 10
636 14.34 wind 1.0 270 > th dose independent rect. 2 5
659 14.34 atmosphere 1015.0 270 < th dose independent rect. 13 18
669 14.34 wind 9.0 90 < th dose dependent rect. 21 7
677 14.34 humidity 70.0 30 > th dose dependent rect. 7 21
683 14.35 humidity 80.0 90 > th dose independent rect. 21 7
709 14.35 radiation 1.0 30 < th dose dependent rect. 18 14
715 14.36 humidity 80.0 720 < th dose independent rect. 19 2
729 14.36 radiation 1.0 30 < th dose independent rect. 18 22
785 14.37 humidity 90.0 720 < th dose dependent rect. 20 1
842 14.38 atmosphere 995.0 10 > th dose dependent rect. 13 9
858 14.39 wind 5.0 270 < th dose independent rect. 21 4
922 14.40 wind 1.0 90 > th dose independent rect. 7 22
931 14.40 temperature 10.0 270 > th dose dependent rect. 7 5
951 14.41 radiation 1.0 270 > th dose independent rect. 7 6
966 14.41 radiation 1.0 30 < th dose independent rect. 18 14
977 14.41 humidity 50.0 10 > th dose independent rect. 9 20