BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0398300 Os04g0398300|AK061199
(292 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29880.1 | chr1:10459662-10462781 REVERSE LENGTH=730 415 e-116
AT1G29870.1 | chr1:10456902-10458782 REVERSE LENGTH=464 119 2e-27
AT3G44740.1 | chr3:16296410-16297687 REVERSE LENGTH=245 54 8e-08
>AT1G29880.1 | chr1:10459662-10462781 REVERSE LENGTH=730
Length = 729
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/280 (74%), Positives = 238/280 (85%)
Query: 1 AEIECSFGWIECVGIADRSAYDLRAHSDKSGVALEAHEKFAEPREVEKLVITPSKKELGL 60
AEIE S+GWIECVGIADRSAYDLRAHSDKSG L A EKFAEP+EVEKLVITP KKELGL
Sbjct: 444 AEIESSYGWIECVGIADRSAYDLRAHSDKSGTPLVAEEKFAEPKEVEKLVITPVKKELGL 503
Query: 61 AFKGNQRMVLEALEAMSETEALNMKSALESKGEVEFKVCTLGKDVTIKKSMVSINMEKKK 120
AFKGNQ+ V+E+LEAM+E EA+ MK+ LESKGEVEF VCTL K V IKK+MVSI+ EKKK
Sbjct: 504 AFKGNQKNVVESLEAMNEEEAMEMKATLESKGEVEFYVCTLKKSVNIKKNMVSISKEKKK 563
Query: 121 EHQRKFTPSVIEPSFGIGRIIYCLFEHCFYQRPGKAEDEQLNVFGFPPLVAPIKCTVFPL 180
EHQR FTPSVIEPSFGIGRIIYCL+EHCF RP KA DEQLN+F FPPLVAPIKCTVFPL
Sbjct: 564 EHQRVFTPSVIEPSFGIGRIIYCLYEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPL 623
Query: 181 VKIEKFEVVAKKISKALTAAGISHIIDMTGNTIGKRYARTDEIGVPLAITVDNTTSVTVR 240
V+ ++FE VAK ISK L + GISH ID+TG +IGKRYARTDE+GVP AITVD+ TSVT+R
Sbjct: 624 VQNQQFEEVAKVISKELASVGISHKIDITGTSIGKRYARTDELGVPFAITVDSDTSVTIR 683
Query: 241 DRDSKDQIRVEVDEVASVVKEVTDGQSTWADIMWRYPAHT 280
+RDSKDQ+RV + E ASVV V++G+ TW D+ +P H+
Sbjct: 684 ERDSKDQVRVTLKEAASVVSSVSEGKMTWQDVWATFPHHS 723
>AT1G29870.1 | chr1:10456902-10458782 REVERSE LENGTH=464
Length = 463
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 63/74 (85%)
Query: 1 AEIECSFGWIECVGIADRSAYDLRAHSDKSGVALEAHEKFAEPREVEKLVITPSKKELGL 60
AEIECS+GWIECVGIADRS YDLRAHS+KSG AL A EK AEP EVEKL ITP KELG
Sbjct: 388 AEIECSYGWIECVGIADRSDYDLRAHSEKSGHALVAQEKLAEPIEVEKLAITPEMKELGP 447
Query: 61 AFKGNQRMVLEALE 74
AFKGNQ+ V+EALE
Sbjct: 448 AFKGNQKNVVEALE 461
>AT3G44740.1 | chr3:16296410-16297687 REVERSE LENGTH=245
Length = 244
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 25/27 (92%)
Query: 1 AEIECSFGWIECVGIADRSAYDLRAHS 27
AE E S+GWIECVGIADRSA+DLRAHS
Sbjct: 204 AEFESSYGWIECVGIADRSAFDLRAHS 230
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,905,232
Number of extensions: 236442
Number of successful extensions: 674
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 3
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)