Os04g0394300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os04g0394300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.99 | 0.433 | 5.91 | 1.86 | 0.948 | 1.35 | 0.0145 | -0.648 | 0.415 | 11 | 24.5 | 51 | -- | -- |
| 85.57 | 0.431 | 5.92 | 1.79 | 0.952 | 1.44 | 0.201 | -- | 0.399 | 11 | 24.31 | 57 | -- | -- |
| 84.99 | 0.429 | 5.91 | 1.86 | 0.948 | 1.35 | -- | -0.652 | 0.415 | 11 | 24.5 | 50 | -- | -- |
| 85.7 | 0.431 | 5.93 | 1.77 | 0.951 | 1.42 | -- | -- | 0.39 | 11 | 24.3 | 56 | -- | -- |
| 109.16 | 0.487 | 5.89 | 2.29 | -- | 1.55 | -- | -2.48 | 0.503 | -- | 34.85 | 810 | -- | -- |
| 114.19 | 0.501 | 5.98 | 1.43 | 0.772 | -- | 0.145 | -- | 0.146 | 10.4 | -- | -- | -- | -- |
| 114.27 | 0.501 | 5.98 | 1.44 | 0.771 | -- | -- | -- | 0.146 | 10.4 | -- | -- | -- | -- |
| 113.76 | 0.497 | 5.94 | 1.84 | -- | 1.51 | -- | -- | 0.432 | -- | 30.26 | 806 | -- | -- |
| 160.57 | 0.593 | 6 | -- | 0.86 | 0.747 | -- | -- | 0.0799 | 10.6 | 23.67 | 22 | -- | -- |
| 150.6 | 0.573 | 6 | 1.43 | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
| 168.85 | 0.608 | 6.02 | -- | 0.764 | -- | -- | -- | -0.0143 | 10.2 | -- | -- | -- | -- |
| 192.98 | 0.647 | 6.02 | -- | -- | 0.802 | -- | -- | 0.0857 | -- | 46.87 | 774 | -- | -- |
| 204.28 | 0.667 | 6.04 | -- | -- | -- | -- | -- | -0.0148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 7 | 83.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 17 | 83.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 19 | 84.13 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 26 | 84.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 28 | 84.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 38 | 84.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 45 | 84.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 55 | 84.98 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 56 | 84.99 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 70 | 85.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 79 | 85.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 85 | 85.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 97 | 85.36 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 106 | 85.41 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 107 | 85.45 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 117 | 85.52 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 122 | 85.54 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 124 | 85.55 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 126 | 85.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 129 | 85.58 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 152 | 85.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 167 | 85.84 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 207 | 86.13 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 266 | 86.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 313 | 86.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 374 | 87.42 | temperature | 25 | 90 | < th | dose dependent | sin | 8 | NA |
| 418 | 87.67 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 449 | 87.79 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 450 | 87.79 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 468 | 87.91 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 479 | 87.98 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 494 | 88.04 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 500 | 88.07 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 522 | 88.14 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 649 | 88.59 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 654 | 88.60 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 681 | 88.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 682 | 88.68 | wind | 9 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 763 | 88.86 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 769 | 88.87 | humidity | 90 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 786 | 88.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 797 | 88.93 | wind | 1 | 43200 | > th | dose dependent | sin | 17 | NA |
| 801 | 88.95 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 802 | 88.95 | wind | 9 | 43200 | < th | dose dependent | sin | 17 | NA |
| 806 | 88.95 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 854 | 89.06 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 15 |
| 878 | 89.11 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 14 |
| 991 | 89.30 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 1 |