BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0394300 Os04g0394300|AK111819
         (917 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0394300  Zinc finger, CCCH-type domain containing protein   1730   0.0  

>Os04g0394300 Zinc finger, CCCH-type domain containing protein
          Length = 917

 Score = 1730 bits (4480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 848/917 (92%), Positives = 848/917 (92%)

Query: 1   NLDVKFAVGLGNLKMIKESSSPALDADKIEVPSPKDENNSSNSEAATDNEDFEISXXXXX 60
           NLDVKFAVGLGNLKMIKESSSPALDADKIEVPSPKDENNSSNSEAATDNEDFEIS     
Sbjct: 1   NLDVKFAVGLGNLKMIKESSSPALDADKIEVPSPKDENNSSNSEAATDNEDFEISDDDDD 60

Query: 61  XRNHKHRKREARPQSFDENTEQSPGGPLKKRHKISGGADSHGEAQKDFFPKFKRRPGAGA 120
            RNHKHRKREARPQSFDENTEQSPGGPLKKRHKISGGADSHGEAQKDFFPKFKRRPGAGA
Sbjct: 61  DRNHKHRKREARPQSFDENTEQSPGGPLKKRHKISGGADSHGEAQKDFFPKFKRRPGAGA 120

Query: 121 HSRAPRVNPSFRDSSASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPP 180
           HSRAPRVNPSFRDSSASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPP
Sbjct: 121 HSRAPRVNPSFRDSSASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPP 180

Query: 181 THPSLFMGPALPSGGSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGM 240
           THPSLFMGPALPSGGSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGM
Sbjct: 181 THPSLFMGPALPSGGSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGM 240

Query: 241 PRQRCRDFEERGFCLRGDMCPMEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGT 300
           PRQRCRDFEERGFCLRGDMCPMEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGT
Sbjct: 241 PRQRCRDFEERGFCLRGDMCPMEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGT 300

Query: 301 APVNTSSLGGSKGVPAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASA 360
           APVNTSSLGGSKGVPAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASA
Sbjct: 301 APVNTSSLGGSKGVPAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASA 360

Query: 361 GFAHTDGVWNAESLGYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGHXXXXXXXXXX 420
           GFAHTDGVWNAESLGYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGH          
Sbjct: 361 GFAHTDGVWNAESLGYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGHGKTANATSTS 420

Query: 421 XXXXXRNESYDEMAPSTVHVNPASAKDSNGQSNSRIFGDVGRQSNRASHKASRTLYVNGI 480
                RNESYDEMAPSTVHVNPASAKDSNGQSNSRIFGDVGRQSNRASHKASRTLYVNGI
Sbjct: 421 ATGNKRNESYDEMAPSTVHVNPASAKDSNGQSNSRIFGDVGRQSNRASHKASRTLYVNGI 480

Query: 481 PLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAVMGNRFIKL 540
           PLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAVMGNRFIKL
Sbjct: 481 PLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAVMGNRFIKL 540

Query: 541 WWANRDRIPDEVEGRIPAKSSHMSAALANSVPQPSSSNRGKENLQSATPRXXXXXXXXXX 600
           WWANRDRIPDEVEGRIPAKSSHMSAALANSVPQPSSSNRGKENLQSATPR          
Sbjct: 541 WWANRDRIPDEVEGRIPAKSSHMSAALANSVPQPSSSNRGKENLQSATPRASSGSSAEAS 600

Query: 601 XXXTGHKMLPANSVKSLPPDTXXXXXXXXXXXXXXXXXXXAQKRDEFRRQLEKLAKQKGL 660
              TGHKMLPANSVKSLPPDT                   AQKRDEFRRQLEKLAKQKGL
Sbjct: 601 GPGTGHKMLPANSVKSLPPDTKRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQKGL 660

Query: 661 ANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEGPRDAAGTLQNRTXXXXXXXXXXXXXX 720
           ANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEGPRDAAGTLQNRT              
Sbjct: 661 ANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEGPRDAAGTLQNRTSGELASSSHKSSAT 720

Query: 721 XXQKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSS 780
             QKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSS
Sbjct: 721 SAQKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSS 780

Query: 781 VVLEDTEAYNHDATLKPSLSCSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGST 840
           VVLEDTEAYNHDATLKPSLSCSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGST
Sbjct: 781 VVLEDTEAYNHDATLKPSLSCSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGST 840

Query: 841 NHSRFQKTSIPARASSFSSQTQNMPSESSTTVGKMSSTVKSSTTAKPHSESMPTATSAKT 900
           NHSRFQKTSIPARASSFSSQTQNMPSESSTTVGKMSSTVKSSTTAKPHSESMPTATSAKT
Sbjct: 841 NHSRFQKTSIPARASSFSSQTQNMPSESSTTVGKMSSTVKSSTTAKPHSESMPTATSAKT 900

Query: 901 SVEIPKALSSRDSDVSQ 917
           SVEIPKALSSRDSDVSQ
Sbjct: 901 SVEIPKALSSRDSDVSQ 917



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.126    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,916,446
Number of extensions: 1355905
Number of successful extensions: 3662
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3661
Number of HSP's successfully gapped: 1
Length of query: 917
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 807
Effective length of database: 11,292,261
Effective search space: 9112854627
Effective search space used: 9112854627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 161 (66.6 bits)