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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0347200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Basic endochitinase precursor (EC 3.2.1.14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0124) R2 : 0.0075
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0485 (0.0262) R2dN8 : 0.00968 R2N8 : 0.0075
σ : 0.234
deviance : 25.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.92 0.228 -1180 7210 0.0703 -296000 -0.0382 1810000 0.0491 6.59 995 90 -- --
24.69 0.233 2.87 -0.013 0.0625 0.469 -0.07 -- 0.0474 6.45 995 90 -- --
23.93 0.228 -1180 7210 0.0701 -296000 -- 1810000 0.0494 6.78 995 90 -- --
23.47 0.226 2.87 -0.00906 0.0681 1.22 -- -- 0.0502 6.69 994.7 140 -- --
24.18 0.229 -1180 7210 -- -296000 -- 1810000 0.0504 -- 995 90 -- --
24.93 0.234 2.87 -0.00943 0.057 -- -0.0926 -- 0.046 6.35 -- -- -- --
24.94 0.234 2.87 -0.0102 0.0575 -- -- -- 0.0465 7.11 -- -- -- --
23.72 0.227 2.88 -0.0158 -- 1.18 -- -- 0.0504 -- 994.7 137 -- --
23.47 0.226 2.87 -- 0.0695 1.21 -- -- 0.0503 6.91 994.7 140 -- --
25.12 0.234 2.88 -0.0091 -- -- -- -- 0.0475 -- -- -- -- --
24.95 0.234 2.87 -- 0.0573 -- -- -- 0.0476 7.12 -- -- -- --
23.73 0.227 2.87 -- -- 1.18 -- -- 0.0521 -- 994.7 139 -- --
25.12 0.234 2.88 -- -- -- -- -- 0.0485 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.34 atmosphere 995.0 30 > th dose independent rect. 3 23
3 21.55 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 21.56 wind 3.0 30 < th dose independent rect. 2 1
5 21.56 temperature 25.0 30 < th dose independent rect. 2 1
6 21.56 wind 3.0 30 < th dose dependent rect. 2 1
10 21.56 temperature 10.0 30 > th dose dependent rect. 2 1
16 21.57 temperature 10.0 30 > th dose independent rect. 2 1
20 21.57 humidity 50.0 30 > th dose independent rect. 2 1
24 21.57 atmosphere 995.0 30 > th dose independent rect. 2 1
25 21.57 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 21.57 radiation 1.0 30 < th dose independent rect. 2 1
32 21.57 precipitation 0.1 30 < th dose independent rect. 2 1
33 21.57 wind 9.0 30 < th dose independent rect. 3 23
34 21.57 temperature 10.0 30 > th dose independent rect. 3 23
35 21.57 humidity 50.0 30 > th dose dependent rect. 2 1
37 21.57 atmosphere 995.0 30 > th dose dependent rect. 2 1
39 21.57 radiation 1.0 30 < th dose dependent rect. 2 1
44 21.57 precipitation 0.1 30 < th dose dependent rect. 2 1
46 21.58 atmosphere 1005.0 30 > th dose independent rect. 2 1
50 21.60 atmosphere 1015.0 30 < th dose dependent rect. 2 1
52 21.64 temperature 30.0 30 < th dose dependent rect. 2 1
58 21.77 wind 1.0 30 > th dose independent rect. 2 1
69 21.83 radiation 1.0 43200 < th dose dependent rect. 3 1
101 21.88 wind 9.0 1440 < th dose independent rect. 3 1
102 21.88 temperature 10.0 1440 > th dose independent rect. 3 1
105 21.88 temperature 30.0 1440 < th dose independent rect. 3 1
109 21.88 humidity 50.0 1440 > th dose independent rect. 3 1
118 21.88 atmosphere 995.0 1440 > th dose independent rect. 3 1
119 21.88 radiation 1.0 1440 < th dose independent rect. 3 1
139 21.88 temperature 10.0 1440 > th dose independent rect. 4 23
143 21.88 radiation 1.0 1440 < th dose dependent rect. 3 1
169 22.13 atmosphere 1015.0 1440 < th dose independent rect. 3 1
212 22.85 temperature 30.0 30 < th dose independent rect. 3 23
218 22.88 precipitation 0.1 30 < th dose independent rect. 3 23
220 22.88 precipitation 0.1 30 < th dose dependent rect. 3 23
261 23.32 temperature 30.0 10 > th dose dependent rect. 11 1
263 23.33 temperature 30.0 10 > th dose independent rect. 11 1
264 23.33 temperature 30.0 90 > th dose independent rect. 11 1
276 23.38 humidity 70.0 720 > th dose independent rect. 3 6
277 23.38 wind 1.0 10 < th dose independent rect. 9 18
304 23.41 humidity 50.0 30 > th dose independent rect. 3 23
306 23.42 atmosphere 995.0 10 > th dose independent sin 9 NA
362 23.48 atmosphere 1000.0 10 < th dose independent rect. 17 1
369 23.48 atmosphere 995.0 720 > th dose independent rect. 23 16
370 23.48 atmosphere 1000.0 10 < th dose dependent rect. 17 1
383 23.49 temperature 30.0 10 > th dose independent rect. 17 1
436 23.50 humidity 70.0 10 < th dose independent rect. 18 1
498 23.51 atmosphere 995.0 10 < th dose independent sin 9 NA
538 23.51 atmosphere 995.0 30 < th dose dependent sin 9 NA
898 23.54 atmosphere 995.0 90 > th dose independent rect. 13 12
902 23.54 temperature 30.0 90 > th dose dependent rect. 16 1
941 23.57 atmosphere 995.0 10 > th dose independent rect. 14 12
963 23.59 temperature 30.0 10 > th dose dependent sin 7 NA
985 23.60 radiation 10.0 90 > th dose dependent rect. 17 1