Os04g0328900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pollen allergen Lol p2 family protein.
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Os04g0328900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pollen allergen Lol p2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.07 | 0.415 | 3.13 | 0.114 | 0.0829 | 0.489 | 0.272 | 1.57 | -0.00081 | 9.19 | 1000 | 5810 | -- | -- |
| 80.2 | 0.417 | 3.14 | 0.0844 | 0.0854 | 0.61 | 0.294 | -- | 0.0081 | 9.29 | 1001 | 5926 | -- | -- |
| 78.21 | 0.412 | 3.13 | 0.122 | 0.0954 | 0.522 | -- | 1.68 | -0.00209 | 7.42 | 999.8 | 5743 | -- | -- |
| 80.36 | 0.418 | 3.14 | 0.0822 | 0.0985 | 0.611 | -- | -- | 0.00524 | 7.21 | 1001 | 5915 | -- | -- |
| 78.69 | 0.413 | 3.13 | 0.124 | -- | 0.536 | -- | 1.72 | -0.00016 | -- | 999.7 | 5722 | -- | -- |
| 87.67 | 0.439 | 3.15 | 0.148 | 0.0897 | -- | 0.277 | -- | -0.0467 | 9.03 | -- | -- | -- | -- |
| 87.86 | 0.439 | 3.15 | 0.156 | 0.1 | -- | -- | -- | -0.0476 | 7.52 | -- | -- | -- | -- |
| 80.88 | 0.419 | 3.14 | 0.0852 | -- | 0.616 | -- | -- | 0.00617 | -- | 1001 | 5830 | -- | -- |
| 80.54 | 0.418 | 3.14 | -- | 0.0992 | 0.627 | -- | -- | -0.00333 | 7.22 | 1001 | 5832 | -- | -- |
| 88.39 | 0.439 | 3.15 | 0.158 | -- | -- | -- | -- | -0.046 | -- | -- | -- | -- | -- |
| 88.5 | 0.44 | 3.15 | -- | 0.102 | -- | -- | -- | -0.065 | 7.42 | -- | -- | -- | -- |
| 81.06 | 0.419 | 3.14 | -- | -- | 0.629 | -- | -- | -0.00169 | -- | 1001 | 5825 | -- | -- |
| 89.05 | 0.44 | 3.15 | -- | -- | -- | -- | -- | -0.0635 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.26 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 2 | 76.10 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 3 | 76.45 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 4 | 76.60 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 5 | 76.65 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 6 | 76.65 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 7 | 76.65 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 10 | 76.73 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 16 | 76.89 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 19 | 76.91 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 24 | 76.95 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 26 | 77.00 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 28 | 77.01 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 29 | 77.01 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 33 | 77.04 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 46 | 77.12 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 48 | 77.12 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 49 | 77.12 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 53 | 77.12 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 55 | 77.12 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 60 | 77.12 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 61 | 77.12 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 63 | 77.12 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 68 | 77.12 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 72 | 77.23 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 2 | 4 |
| 74 | 77.29 | humidity | 80.0 | 270 | < th | dose independent | rect. | 24 | 4 |
| 85 | 77.40 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 105 | 77.57 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 119 | 77.69 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 136 | 77.81 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 142 | 77.87 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 147 | 77.90 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 183 | 78.16 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 196 | 78.21 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 208 | 78.24 | humidity | 80.0 | 10 | < th | dose independent | rect. | 2 | 4 |
| 212 | 78.24 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 227 | 78.28 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 290 | 78.42 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 293 | 78.42 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 302 | 78.43 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 327 | 78.48 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 458 | 78.67 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 486 | 78.70 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 23 | 18 |
| 489 | 78.70 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 492 | 78.70 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 496 | 78.71 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 497 | 78.71 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 501 | 78.71 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 507 | 78.71 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 514 | 78.71 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 21 |
| 523 | 78.71 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 528 | 78.72 | atmosphere | 995.0 | 14400 | > th | dose independent | no | NA | NA |
| 533 | 78.72 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 2 | 15 |
| 534 | 78.72 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 15 |
| 564 | 78.72 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 21 |
| 608 | 78.73 | atmosphere | 995.0 | 14400 | < th | dose independent | no | NA | NA |
| 609 | 78.73 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 12 |
| 610 | 78.73 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 618 | 78.73 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 685 | 78.73 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 1 | 22 |
| 733 | 78.74 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 785 | 78.74 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 9 |
| 786 | 78.75 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 832 | 78.75 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 840 | 78.75 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 854 | 78.76 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 942 | 78.77 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 0 | NA |