BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0328900 Os04g0328900|Os04g0328900
         (99 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65680.1  | chr1:24427266-24428399 FORWARD LENGTH=274           48   8e-07
AT3G60570.1  | chr3:22391247-22392463 FORWARD LENGTH=253           46   3e-06

>AT1G65680.1 | chr1:24427266-24428399 FORWARD LENGTH=274
          Length = 273

 Score = 48.1 bits (113), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 11  EVAKGSSAKSLELVTNVA-----ISKVEVKEKGGKD-WVALKESSSNTWTLKSESPLKGP 64
           +V KGS+A S  ++         I ++E+K+    D W+++ +S    W L   SPL+ P
Sbjct: 178 QVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAP 237

Query: 65  FSVRFLVKNSGYRVV-DDIIPESFTAGSEYKSGIQL 99
            S+R     SG  VV  ++IP ++  G+ YKS +  
Sbjct: 238 LSLRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273



>AT3G60570.1 | chr3:22391247-22392463 FORWARD LENGTH=253
          Length = 252

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 32  VEVKEKGGKDWVALKESSSNTWTLKSESPLKGPFSVRFLVKNSGYRVV-DDIIPESFTAG 90
           +EV+  GG+ ++ ++E  S  W L    PLKGPF++R     SG +++   +IPE ++ G
Sbjct: 178 IEVQPAGGQ-YMKMEEMRSAVWRLSPGVPLKGPFNIRLTSAVSGKKIIAKGVIPEKWSPG 236

Query: 91  SEYKSGIQL 99
           + Y S +  
Sbjct: 237 AIYHSKVNF 245



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.124    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,039,681
Number of extensions: 73337
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 99
Length of database: 11,106,569
Length adjustment: 69
Effective length of query: 30
Effective length of database: 9,214,865
Effective search space: 276445950
Effective search space used: 276445950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 104 (44.7 bits)