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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0286500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.025) R2 : 0.000586
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0273 (0.0527) R2dN8 : 0.000756 R2N8 : 0.000586
σ : 0.472
deviance : 102.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.82 0.401 4.5 1.75 0.45 128 -1.2 270 -0.0974 9.57 15.02 685 -- --
76.9 0.412 3.4 -0.532 0.442 -0.151 -1.13 -- -0.0921 9.42 15.02 685 -- --
78.06 0.412 4.4 1.52 0.433 127 -- 269 -0.0989 9.6 14.95 697 -- --
80.79 0.421 3.41 -0.605 0.442 -0.653 -- -- -0.101 9.55 15.8 1449 -- --
89.96 0.442 4.36 1.37 -- 128 -- 270 -0.0953 -- 14.95 633 -- --
76.95 0.411 3.4 -0.525 0.443 -- -1.15 -- -0.0905 9.44 -- -- -- --
81.75 0.423 3.4 -0.567 0.447 -- -- -- -0.0916 9.58 -- -- -- --
92.12 0.447 3.42 -0.618 -- -0.731 -- -- -0.1 -- 15.8 248 -- --
90.06 0.442 3.39 -- 0.449 0.232 -- -- -0.0252 9.67 15.1 1032 -- --
93.56 0.452 3.42 -0.57 -- -- -- -- -0.0905 -- -- -- -- --
90.22 0.444 3.39 -- 0.448 -- -- -- -0.0284 9.68 -- -- -- --
94.96 0.454 3.38 -- -- 0.566 -- -- 0.055 -- 46.95 3727 -- --
102.14 0.472 3.4 -- -- -- -- -- -0.0273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.38 temperature 25.0 270 < th dose independent rect. 5 3
2 66.81 humidity 90.0 270 < th dose independent rect. 5 3
3 66.91 atmosphere 1000.0 270 > th dose dependent rect. 5 3
5 67.02 atmosphere 1005.0 270 > th dose independent rect. 5 3
7 67.20 radiation 1.0 270 > th dose dependent rect. 17 14
10 67.30 temperature 30.0 270 < th dose dependent rect. 5 3
11 67.30 atmosphere 995.0 90 > th dose dependent rect. 5 6
12 67.33 temperature 25.0 270 < th dose independent rect. 6 1
14 67.49 temperature 15.0 270 > th dose independent rect. 5 15
15 67.53 temperature 25.0 270 < th dose independent rect. 4 5
17 67.55 radiation 1.0 270 > th dose dependent rect. 4 3
31 67.64 temperature 15.0 90 > th dose independent rect. 5 6
49 68.14 atmosphere 1005.0 90 > th dose independent rect. 5 6
52 68.22 temperature 30.0 90 < th dose dependent rect. 5 5
54 68.26 atmosphere 1000.0 10 > th dose dependent rect. 7 4
57 68.34 wind 7.0 90 < th dose independent rect. 5 6
60 68.39 atmosphere 1005.0 10 > th dose independent rect. 7 4
66 68.44 radiation 1.0 270 < th dose dependent rect. 20 16
99 68.76 precipitation 0.1 90 < th dose independent rect. 5 6
101 68.76 precipitation 0.1 90 < th dose dependent rect. 5 6
103 68.78 radiation 1.0 270 > th dose independent rect. 4 4
114 68.78 radiation 1.0 270 > th dose independent rect. 17 15
122 68.80 atmosphere 1015.0 90 < th dose independent rect. 5 6
123 68.80 temperature 30.0 10 < th dose independent rect. 18 17
124 68.80 temperature 10.0 90 > th dose independent rect. 11 18
125 68.81 humidity 50.0 90 > th dose independent rect. 5 6
126 68.81 radiation 1.0 270 < th dose independent rect. 20 16
137 68.91 atmosphere 995.0 90 > th dose independent rect. 11 18
141 68.92 precipitation 0.1 90 < th dose independent rect. 11 18
142 68.92 precipitation 0.1 90 < th dose dependent rect. 11 18
144 68.93 temperature 30.0 10 < th dose dependent rect. 6 5
156 68.96 wind 1.0 90 > th dose independent rect. 11 18
157 68.97 temperature 30.0 90 < th dose independent rect. 18 16
158 68.97 humidity 90.0 90 < th dose dependent rect. 18 16
162 69.00 humidity 90.0 270 < th dose dependent rect. 6 2
164 69.00 humidity 90.0 90 < th dose dependent rect. 3 7
168 69.04 humidity 90.0 90 < th dose dependent rect. 6 4
169 69.05 wind 5.0 270 < th dose independent rect. 5 3
182 69.13 precipitation 0.1 90 < th dose independent rect. 17 17
184 69.13 precipitation 0.1 90 < th dose dependent rect. 17 17
187 69.14 wind 7.0 270 < th dose independent rect. 3 7
188 69.14 wind 9.0 90 < th dose independent rect. 17 17
190 69.15 precipitation 0.1 270 < th dose independent rect. 5 3
192 69.15 precipitation 0.1 270 < th dose dependent rect. 5 3
194 69.16 temperature 10.0 270 > th dose independent rect. 5 3
197 69.16 humidity 50.0 270 > th dose independent rect. 5 3
200 69.16 atmosphere 1015.0 270 < th dose independent rect. 5 3
201 69.16 temperature 10.0 270 > th dose independent rect. 8 21
205 69.17 temperature 10.0 90 > th dose independent rect. 10 7
206 69.17 atmosphere 1015.0 90 < th dose independent rect. 10 7
207 69.17 temperature 10.0 90 > th dose independent rect. 17 17
220 69.21 atmosphere 995.0 90 > th dose independent rect. 10 7
221 69.21 atmosphere 995.0 90 > th dose independent rect. 17 17
230 69.23 radiation 1.0 30 > th dose independent rect. 11 7
231 69.23 precipitation 0.1 90 < th dose independent rect. 10 7
234 69.23 precipitation 0.1 90 < th dose dependent rect. 10 7
239 69.25 humidity 50.0 90 > th dose independent rect. 17 17
246 69.26 precipitation 0.1 270 < th dose independent rect. 5 15
247 69.26 wind 9.0 270 < th dose independent rect. 8 21
248 69.26 wind 9.0 90 < th dose dependent rect. 5 6
249 69.26 precipitation 0.1 270 < th dose dependent rect. 5 15
250 69.27 wind 1.0 90 > th dose independent rect. 10 7
269 69.28 atmosphere 995.0 90 > th dose dependent rect. 17 17
270 69.29 temperature 10.0 10 > th dose independent rect. 11 7
272 69.29 atmosphere 1015.0 10 < th dose independent rect. 11 7
273 69.29 temperature 10.0 10 > th dose independent rect. 18 17
274 69.29 humidity 50.0 10 > th dose independent rect. 18 17
275 69.29 precipitation 0.1 10 < th dose independent rect. 18 17
276 69.29 precipitation 0.1 10 < th dose dependent rect. 18 17
277 69.30 precipitation 0.1 10 < th dose independent rect. 11 7
279 69.30 atmosphere 995.0 10 > th dose independent rect. 18 17
282 69.30 precipitation 0.1 10 < th dose dependent rect. 11 7
283 69.31 atmosphere 995.0 10 > th dose independent rect. 11 7
286 69.32 wind 9.0 90 < th dose independent rect. 11 18
291 69.34 radiation 1.0 270 < th dose dependent rect. 20 9
296 69.36 precipitation 0.1 270 < th dose independent rect. 8 21
298 69.36 precipitation 0.1 270 < th dose dependent rect. 8 21
299 69.37 wind 9.0 10 < th dose independent rect. 18 17
300 69.37 humidity 50.0 90 > th dose independent rect. 11 18
302 69.38 radiation 1.0 270 < th dose independent rect. 20 9
304 69.38 radiation 1.0 90 > th dose independent rect. 18 17
319 69.39 wind 1.0 10 > th dose independent rect. 11 7
330 69.40 radiation 40.0 270 < th dose independent rect. 5 3
333 69.40 atmosphere 995.0 10 > th dose dependent rect. 18 17
360 69.43 radiation 1.0 90 > th dose independent rect. 4 7
375 69.44 humidity 50.0 90 > th dose independent rect. 10 7
383 69.45 atmosphere 995.0 270 > th dose independent rect. 8 21
399 69.50 temperature 10.0 270 > th dose independent rect. 20 9
400 69.50 temperature 30.0 270 < th dose independent rect. 20 9
401 69.50 humidity 50.0 270 > th dose independent rect. 20 9
404 69.50 atmosphere 995.0 270 > th dose independent rect. 20 9
408 69.50 precipitation 0.1 270 < th dose independent rect. 20 9
410 69.50 atmosphere 1015.0 270 < th dose independent rect. 5 15
411 69.50 precipitation 0.1 270 < th dose dependent rect. 20 9
413 69.51 wind 9.0 270 < th dose independent rect. 20 9
424 69.54 temperature 10.0 1440 > th dose independent rect. 12 7
428 69.54 temperature 10.0 1440 > th dose independent rect. 19 17
431 69.54 atmosphere 995.0 1440 > th dose independent rect. 19 17
449 69.57 humidity 90.0 10 < th dose dependent rect. 18 17
452 69.59 precipitation 0.1 270 < th dose independent rect. 3 7
454 69.59 precipitation 0.1 270 < th dose dependent rect. 3 7
456 69.60 radiation 1.0 270 > th dose independent sin 11 NA
458 69.60 wind 9.0 270 < th dose dependent rect. 5 3
464 69.63 wind 9.0 270 < th dose independent rect. 9 19
473 69.65 radiation 1.0 270 < th dose independent sin 11 NA
480 69.66 atmosphere 995.0 270 > th dose independent rect. 3 7
481 69.66 atmosphere 1015.0 270 < th dose independent rect. 3 7
503 69.66 humidity 50.0 10 > th dose independent rect. 11 18
505 69.66 radiation 1.0 270 < th dose dependent sin 11 NA
506 69.66 atmosphere 1000.0 90 > th dose dependent rect. 9 1
510 69.67 humidity 50.0 270 > th dose independent rect. 3 7
519 69.69 wind 9.0 90 < th dose independent rect. 10 7
530 69.71 temperature 10.0 270 > th dose independent rect. 8 8
531 69.71 atmosphere 1015.0 270 < th dose independent rect. 8 8
535 69.72 atmosphere 995.0 270 > th dose independent rect. 5 15
548 69.74 atmosphere 995.0 270 > th dose independent rect. 8 8
574 69.77 humidity 50.0 10 > th dose independent rect. 11 7
592 69.80 wind 1.0 90 > th dose independent rect. 5 6
593 69.80 wind 9.0 270 < th dose independent rect. 5 15
603 69.82 wind 9.0 10 < th dose dependent rect. 5 6
608 69.84 precipitation 0.1 270 < th dose independent rect. 8 8
611 69.84 precipitation 0.1 270 < th dose dependent rect. 8 8
631 69.88 humidity 50.0 1440 > th dose independent rect. 19 16
638 69.88 atmosphere 995.0 270 > th dose dependent rect. 4 16
706 69.95 radiation 40.0 270 < th dose independent rect. 16 16
736 69.99 atmosphere 995.0 30 > th dose dependent rect. 5 18
739 70.00 humidity 50.0 270 > th dose independent rect. 8 8
763 70.03 atmosphere 1015.0 30 < th dose independent rect. 11 18
777 70.08 wind 9.0 270 < th dose independent rect. 8 8
814 70.12 humidity 50.0 270 > th dose independent rect. 8 21
833 70.14 temperature 10.0 1440 > th dose independent rect. 5 7
836 70.14 atmosphere 995.0 1440 > th dose independent rect. 5 7
848 70.14 temperature 10.0 1440 > th dose independent rect. 12 17
907 70.19 wind 1.0 270 > th dose independent rect. 8 8
984 70.25 wind 1.0 270 > th dose independent rect. 5 3
986 70.25 humidity 80.0 90 < th dose independent rect. 23 11
987 70.25 humidity 50.0 270 > th dose independent rect. 5 15
997 70.27 atmosphere 1015.0 10 < th dose independent rect. 18 17