BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0286500 Os04g0286500|AK064584
(417 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591 74 2e-13
AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303 71 1e-12
AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592 61 1e-09
>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
Length = 590
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 7/151 (4%)
Query: 145 TGRRGTHVNWTXXXXXXXXXXXXXXXXDSINGNDKKGEYYWRDVAAEFNGNAS-SNNRKR 203
T RR W+ D I N+ K +W+ + A FN +AS +N KR
Sbjct: 264 TDRRKHRRKWSRAEDAILISAWLNTSKDPIVDNEHKACAFWKRIGAYFNNSASLANLPKR 323
Query: 204 TVVQCKTHWGGVKKDIAKFCGAYSRARRTWSSGFSDDMIMEKAHALYKSENNDKTFTLEY 263
CK W + + KF G Y +A SSG S+D + + A+ +Y + N FTLE+
Sbjct: 324 EPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQVY-TNNYKSNFTLEH 382
Query: 264 MWRELKDQPKWRRILE-EDSK----NKRTKI 289
WREL+ KW + E+SK +KRTK+
Sbjct: 383 AWRELRHSKKWCSLYPFENSKGGGSSKRTKL 413
>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
Length = 302
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 172 DSINGNDKKGEYYWRDVAAEFNGNASSNN-RKRTVVQCKTHWGGVKKDIAKFCGAYSRAR 230
D++ GN++KG +W +AA + + N KR K W + + + KF G+Y A
Sbjct: 68 DAVIGNEQKGYAFWSRIAAYYGASPKLNGVEKRETGHIKQRWTKINEGVGKFVGSYEAAT 127
Query: 231 RTWSSGFSDDMIMEKAHALYKSENNDKTFTLEYMWRELKDQPKW 274
+ SSG +DD ++ AH +Y SE+ FTLE+ WR L+ + KW
Sbjct: 128 KQKSSGQNDDDVVALAHEIYNSEHGK--FTLEHAWRVLRFEQKW 169
>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
Length = 591
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 177 NDKKGEYYWRDVAAEFNGNAS-SNNRKRTVVQCKTHWGGVKKDIAKFCGAYSRARRTWSS 235
++++ +W+ + A + +AS +N KR C+ W + + KF G Y +A +S
Sbjct: 298 DEQQAHTFWKRIGAHVSNSASLANLPKREWNHCRQRWRKINDYVCKFVGCYDQALNQRAS 357
Query: 236 GFSDDMIMEKAHALYKSENNDKTFTLEYMWRELKDQPKW-RRILEEDSK----NKRTKIS 290
G S+D + + A+ LY + N F LE+ WREL+ KW E+SK +KRTK++
Sbjct: 358 GQSEDDVFQVAYQLYYN-NYMSNFKLEHAWRELRHNKKWCSTYTSENSKGGGSSKRTKLN 416
Query: 291 ESGAY 295
G Y
Sbjct: 417 GGGVY 421
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,165,561
Number of extensions: 255068
Number of successful extensions: 466
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 3
Length of query: 417
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,337,553
Effective search space: 2634666748
Effective search space used: 2634666748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)