Os04g0266400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AHM2 (Fragment).
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Os04g0266400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AHM2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.73 | 0.198 | 11.2 | -0.689 | 0.127 | 0.928 | -0.708 | 0.499 | 0.0117 | 18.4 | 6.933 | 5223 | -- | -- |
| 17.94 | 0.197 | 11.2 | -0.795 | 0.13 | 0.904 | -0.728 | -- | -0.0208 | 18.3 | 8.806 | 5240 | -- | -- |
| 18.82 | 0.202 | 11.2 | -0.678 | 0.139 | 0.917 | -- | 0.495 | 0.00874 | 19.7 | 5.188 | 5316 | -- | -- |
| 19.02 | 0.203 | 11.2 | -0.783 | 0.132 | 0.887 | -- | -- | -0.0183 | 19.9 | 8.488 | 5207 | -- | -- |
| 19.73 | 0.207 | 11.2 | -0.678 | -- | 0.922 | -- | 0.51 | 0.0112 | -- | 6.305 | 5118 | -- | -- |
| 31.56 | 0.263 | 11.1 | -0.376 | 0.146 | -- | -0.617 | -- | 0.161 | 19 | -- | -- | -- | -- |
| 32.14 | 0.265 | 11.1 | -0.367 | 0.162 | -- | -- | -- | 0.158 | 21 | -- | -- | -- | -- |
| 19.93 | 0.208 | 11.2 | -0.789 | -- | 0.898 | -- | -- | -0.0208 | -- | 7.961 | 5103 | -- | -- |
| 28.41 | 0.248 | 11.1 | -- | 0.151 | 0.437 | -- | -- | 0.123 | 19.5 | 22.29 | 2751 | -- | -- |
| 33.64 | 0.271 | 11.1 | -0.367 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 35.69 | 0.279 | 11.1 | -- | 0.162 | -- | -- | -- | 0.199 | 20.8 | -- | -- | -- | -- |
| 28.96 | 0.251 | 11.1 | -- | -- | 0.488 | -- | -- | 0.119 | -- | 22.3 | 2183 | -- | -- |
| 37.19 | 0.285 | 11.1 | -- | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.44 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 2 | 17.44 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 10 | 17.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 18 | 17.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 84 | 17.72 | temperature | 10 | 4320 | > th | dose dependent | sin | 3 | NA |
| 174 | 17.87 | temperature | 30 | 4320 | < th | dose dependent | sin | 3 | NA |
| 456 | 18.05 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 828 | 18.19 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |